Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g039887m |
Family | CE8 |
Protein Properties | Length: 241 Molecular Weight: 26709.3 Isoelectric Point: 8.6744 |
Chromosome | Chromosome/Scaffold: 00001 Start: 4143550 End: 4145229 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 72 | 241 | 0 |
ITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMK FENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE |
Full Sequence |
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Protein Sequence Length: 241 Download |
MASKSYFQFI LFLLSLSNFS LKCCSLRNVD KETDFNKWAL WQAESVSQQV PGAGGRVLDD 60 KLWKAETNKV RITVCQNGTG DFKTIREAIN SIPPYNTRRV ILEIKPGVYR EKVSIPKPLP 120 FVTFLGNSSD PPTITGNDTA SATGSDGKPL KTFQSATVAV DANYFVAINM KFENTAPHVV 180 GSMGEQAVAL RISGTKAAFY NCSFYGAQDT LYDHKGLHYF NNCFIQGSVD FIFGYGRSLY 240 E |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 9.0e-53 | 72 | 234 | 163 | + Pectinesterase. | ||
PLN02671 | PLN02671 | 1.0e-56 | 64 | 241 | 181 | + pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-63 | 63 | 241 | 180 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-70 | 27 | 241 | 221 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 6.0e-73 | 58 | 240 | 184 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 1 | 241 | 1 | 253 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 42 | 240 | 79 | 278 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 46 | 240 | 82 | 277 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 80 | 241 | 1 | 162 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002443368.1 | 0 | 52 | 241 | 103 | 293 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-32 | 72 | 234 | 9 | 161 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-21 | 74 | 234 | 7 | 157 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.000000000000002 | 82 | 240 | 18 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000000002 | 82 | 240 | 18 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000000002 | 82 | 240 | 18 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |