Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g040454m |
Family | GH28 |
Protein Properties | Length: 474 Molecular Weight: 49955.9 Isoelectric Point: 6.2711 |
Chromosome | Chromosome/Scaffold: 00028 Start: 51193 End: 53585 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 431 | 0 |
AAACKIEGATMVVPSGSVFLVGPISFSGPTCQPNILFQLDGKIIAPTNSGAWGSGILQWLEFSKLKGITLTGKGIIDGQGSVWWHDAPSSYGTADDSASS ELKGNMPGTKPTALRFYGSSGVTVTGITIQNSQQTHLKFDDCTAVQVSDFTASSPGDSPNTDGIHLQNSQDVTIYSSTLACGDDCVSIQTGCSNIDVHNV NCGPGHGISIGSLGKDNTNACVSKITVRDVTMHNTMTGVRIKTWQGGSGLVQQVTFSNIQVNNVKSPIVIDQYYCEKSSCHNESSAVQVSNIAYVNIRGT YTEQPAHFACSDILPCTGISLSTVALKPVQSA |
Full Sequence |
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Protein Sequence Length: 474 Download |
MAAACNNLTS LALAILTAFL LGSSSFETCS ARDQTKHSIQ SSTAHEPSLQ GRKLSKFTSY 60 AYSGAPEEMA TSSAIFNVLS YGAKGDGRTD DTKAFEAAWA AACKIEGATM VVPSGSVFLV 120 GPISFSGPTC QPNILFQLDG KIIAPTNSGA WGSGILQWLE FSKLKGITLT GKGIIDGQGS 180 VWWHDAPSSY GTADDSASSE LKGNMPGTKP TALRFYGSSG VTVTGITIQN SQQTHLKFDD 240 CTAVQVSDFT ASSPGDSPNT DGIHLQNSQD VTIYSSTLAC GDDCVSIQTG CSNIDVHNVN 300 CGPGHGISIG SLGKDNTNAC VSKITVRDVT MHNTMTGVRI KTWQGGSGLV QQVTFSNIQV 360 NNVKSPIVID QYYCEKSSCH NESSAVQVSN IAYVNIRGTY TEQPAHFACS DILPCTGISL 420 STVALKPVQS ATQPFCWEAY GELKTATDPP INCLRRGMPP NAKSHPYSDS CQN* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-81 | 75 | 415 | 346 | + polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-83 | 64 | 426 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-83 | 108 | 425 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-89 | 1 | 426 | 431 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-103 | 72 | 450 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 68 | 459 | 38 | 430 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 68 | 459 | 38 | 430 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 8 | 470 | 7 | 506 | polygalacturonase 1 [Prunus persica] |
EMBL | CBI34901.1 | 0 | 23 | 471 | 21 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002521450.1 | 0 | 23 | 471 | 22 | 466 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-25 | 169 | 376 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-23 | 77 | 441 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 5e-23 | 167 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-23 | 167 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-23 | 167 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |