Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g040748m |
Family | GH28 |
Protein Properties | Length: 585 Molecular Weight: 63017.1 Isoelectric Point: 6.38 |
Chromosome | Chromosome/Scaffold: 00001 Start: 4065043 End: 4067257 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 216 | 543 | 0 |
ACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPG PCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGH GISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSP PMHFACSDTVPCTNLTLSEVELLPAKGD |
Full Sequence |
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Protein Sequence Length: 585 Download |
MAYSRRVSIL IFCICFLGFI LSVQARRHHS IKHKHTHHHN TYEFSETPSP SPSPQLTDPS 60 NNTNAHNSAN SPSPSPEADS PSDDWNADNS TAASSPSPEP SNPPSGYNAM RAPSPSTEPA 120 NPPNKGNGYD SPGAPSASHA PTNPLNGYNF TRTPSPSSGP AAPPNKGNDY NSPGAPTTSP 180 ANSPDDGNVI DVRKFGAVGD GISDDTEAFK MTWDSACQKD FAVIHVPYGF SFMIQSTIFT 240 GPCQGSIVFQ VDGTIMPPDG PESWLQKNSK RQWLVFYKIN ELSLQGGGTI DGRGHKWWDL 300 PCKPHKGING TTSPGPCDSP IALRFFMSSN LTVQRLRIKD SPQFHFRFDN CKNVHIESIH 360 ITAPALSPNT DGIHIENTNG VEIYNSVISN GDDCVSIGSG CYDVDIRNIT CGPGHGISIG 420 SLGNHNSRAC VSNITVRDSV IKVSNNGVRI KTWQGGSGAV SGITFSNIHM NNVRNPIIID 480 QYYCLTKDCT NKTSAVYVSD ILYSNIKGTY DIRSPPMHFA CSDTVPCTNL TLSEVELLPA 540 KGDLVSDPFC WNAYGDLPTL TIPPVSCLLE GIPRSLLDNE IDHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-81 | 177 | 564 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-82 | 188 | 568 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-89 | 237 | 537 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-97 | 190 | 537 | 352 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-122 | 179 | 564 | 389 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 175 | 584 | 74 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 175 | 584 | 55 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 189 | 584 | 68 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 189 | 584 | 42 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 584 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-26 | 252 | 541 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-26 | 252 | 541 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-26 | 252 | 541 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-26 | 252 | 541 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-26 | 252 | 541 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |