y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g040962m |
Family | GH28 |
Protein Properties | Length: 248 Molecular Weight: 26509.8 Isoelectric Point: 8.263 |
Chromosome | Chromosome/Scaffold: 00206 Start: 273336 End: 274079 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 234 | 0 |
MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSL GRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQC SKTFPCENIVLQDIYLVHNGRDGAATSSCNFVD |
Full Sequence |
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Protein Sequence Length: 248 Download |
SMVFNFVTNS RISGITSVNS KNAHISLYGC HKVSIDNIKI TAPYQSPNTD GIKIGDSKGI 60 KITHSSIGTG DDCIALLSGS TNINVTDVTC GPGHGISVGS LGRYANERNV HGLAVRNCTF 120 RGTTNGVRIK TWASPQANVA SGFTFENIFM SNVENPIVID QMYCPHGSCN QKITSNVQIK 180 DVTYRNIWGT SSTKVAVNFQ CSKTFPCENI VLQDIYLVHN GRDGAATSSC NFVDGDSYGT 240 QKPPSCL* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-55 | 9 | 237 | 230 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-59 | 1 | 247 | 250 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-59 | 1 | 247 | 247 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-69 | 1 | 233 | 233 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-86 | 1 | 246 | 247 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD50028.1 | 0 | 2 | 247 | 122 | 368 | AC007651_23 Similar to polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 2 | 247 | 155 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 1 | 247 | 151 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 1 | 246 | 122 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 1 | 247 | 143 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-19 | 15 | 183 | 167 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000001 | 48 | 190 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 48 | 190 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 48 | 190 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000001 | 48 | 190 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT741125 | 246 | 1 | 246 | 0 |
GR453460 | 247 | 1 | 246 | 0 |
GR454433 | 247 | 1 | 246 | 0 |
DR933566 | 209 | 12 | 219 | 0 |
GR458681 | 244 | 4 | 246 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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