Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g040991m |
Family | PL4 |
Protein Properties | Length: 184 Molecular Weight: 21146.8 Isoelectric Point: 7.0734 |
Chromosome | Chromosome/Scaffold: 00094 Start: 157240 End: 158517 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 21 | 173 | 1.4013e-45 |
QTLDYREPVLLTNPTNKDINCHVLVDYRYLYSSEHEDSRVHGWISQNLPVGFWMIAPSDEFRARGPIKQELTSNVGPTVLSKFSSTHYSGREIDTYYGKG EPWKKVLGPAFVYLNSVSSPENPRALWEDAKQQMLKEVESWPYDFSRSKDFPN |
Full Sequence |
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Protein Sequence Length: 184 Download |
MAVQDHKPKL MPLNGDRIKG QTLDYREPVL LTNPTNKDIN CHVLVDYRYL YSSEHEDSRV 60 HGWISQNLPV GFWMIAPSDE FRARGPIKQE LTSNVGPTVL SKFSSTHYSG REIDTYYGKG 120 EPWKKVLGPA FVYLNSVSSP ENPRALWEDA KQQMLKEVES WPYDFSRSKD FPNPIKDEAR 180 RET* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 0.001 | 1 | 39 | 41 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 1.0e-27 | 15 | 140 | 126 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263719.1 | 0 | 1 | 172 | 122 | 291 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 1 | 173 | 198 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 173 | 142 | 312 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 172 | 195 | 364 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 173 | 143 | 314 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW430189 | 175 | 1 | 173 | 0 |
EL398250 | 172 | 1 | 172 | 0 |
GW429248 | 173 | 3 | 173 | 0 |
EG691325 | 174 | 1 | 172 | 0 |
GR166104 | 174 | 1 | 171 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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