Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g041224m |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42287.4 Isoelectric Point: 6.3327 |
Chromosome | Chromosome/Scaffold: 00396 Start: 57382 End: 59970 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 386 | 0 |
CGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCN NLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTS IVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTD IKINNIDITHSDSGKDTRASCINAHGE |
Full Sequence |
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Protein Sequence Length: 401 Download |
MRELLIIILI LSMAIWGSSF QPCEAFPSYA SSVSVIQFGA VGDGETDDSQ AFLKAWKSIC 60 GSKSNAAPLL VPAGKTFLLN PVSFQGPCKS SSINVQIQGN IVAPHSSAWD GHDKKKWLLF 120 SNVNGLTVNG NGKIDGKGAS WWSNKQNQRP TALSFGSCNN LVFRGLTHVD SPGNHISVYG 180 CNDVSISNLK IIAPESSPNT DGIDITHSSN VQIRDCTIAT GDDCVAIGTD TSNIAVTGVI 240 CGPGHGISIG SLGANGGTSI VEDVHVRDCT FKGTKNGARI KTWQGGSGHA RRISFERIRL 300 ESSDNPIIID QYYCGPNGDC KNQTSAVKVS DVSYIGFQGT SSTEEAVQLS CSESVGCTDI 360 KINNIDITHS DSGKDTRASC INAHGELYGQ LVPSVDCLLP * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-94 | 31 | 393 | 373 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 3.0e-96 | 33 | 393 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 5.0e-118 | 21 | 394 | 383 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-129 | 29 | 386 | 359 | + polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-134 | 28 | 398 | 375 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36307.1 | 0 | 1 | 398 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_566524.1 | 0 | 30 | 398 | 21 | 389 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266543.1 | 0 | 34 | 398 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 31 | 399 | 18 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 1 | 398 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-21 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-21 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-21 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-21 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-21 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |