Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g041470m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42851.3 Isoelectric Point: 7.564 |
Chromosome | Chromosome/Scaffold: 00015 Start: 797437 End: 799800 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 376 | 0 |
ATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIG LVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSL GMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHV KPEKKTSSYCSNVRGT |
Full Sequence |
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Protein Sequence Length: 395 Download |
MANYVAVLFL LLSTQCFLSA HCRHLPSNQG AIGDAFDVLN YGAAGDGHTD DTQAFKDAWK 60 ATCKSSSSSP TMHVPHDKSF KLQPLTFSGE ICKSNSITFQ IDGHLVAPRD PHAWNTCDGS 120 KCRQWIQFKK FGGLFIRGVG SINGQGSNWW KLSCKHDKIG LVVANSNNVH IDDLTFEDSP 180 QMHIAFERST NIEATNLTIM APGNSPNTDG IHIQHSSNVS IAHSIISTGD DCVSIGDGSS 240 HLNITNIFCG PGHGISIGSL GMKGRNEKVE FVHVNNVSFT ETQNGVRIKT WQGSYNPIVI 300 DQYYCPHKHC KNKTLAVKIS DVTYNHILGT SNGETAVAFS CSTSTPCKNI IMKDIHLGHV 360 KPEKKTSSYC SNVRGTADPG VFPKVSCLQV DENV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-81 | 38 | 386 | 376 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 7.0e-82 | 34 | 394 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-88 | 36 | 384 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 6.0e-92 | 33 | 375 | 361 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-102 | 36 | 392 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 1 | 389 | 1 | 407 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 1 | 388 | 1 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 33 | 392 | 23 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 1 | 388 | 1 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321662.1 | 0 | 36 | 388 | 26 | 352 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-16 | 118 | 357 | 95 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000002 | 142 | 373 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000002 | 142 | 373 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000002 | 142 | 373 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000002 | 142 | 373 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |