| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g041616m |
| Family | PL1 |
| Protein Properties | Length: 203 Molecular Weight: 23697.4 Isoelectric Point: 10.6421 |
| Chromosome | Chromosome/Scaffold: 00105 Start: 125015 End: 126454 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 49 | 164 | 1.3e-39 |
| NITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFA HVINNLYRKWTQYTIG | |||
| Full Sequence |
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| Protein Sequence Length: 203 Download |
| MTNNVGKDVV RYKVTDPGDD TINPKPGTLR YEAILIPQKV WTTYRKHMNI TLHKLRKIDR 60 DAIRLVIALK VWIDHNTLYK CQNGLIDVTR GSTDVTISNN WFRNQDKIKL LGHDDGYIRD 120 KNMKMTIAYN HFGRNCNQRM PRVRHGFAHV INNLYRKWTQ YTIGKANLKY TEEQKCQVAN 180 AKSMRSLTSE LRVSKCSRRS RC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-20 | 49 | 172 | 140 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-34 | 59 | 164 | 114 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-39 | 49 | 164 | 128 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 188 | 1 | 249 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 188 | 50 | 298 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002304865.1 | 0 | 1 | 166 | 32 | 257 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458626.1 | 0 | 1 | 174 | 55 | 288 | hypothetical protein SORBIDRAFT_03g036930 [Sorghum bicolor] |
| RefSeq | XP_002527354.1 | 0 | 1 | 166 | 60 | 285 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 5e-36 | 49 | 202 | 139 | 291 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 5e-36 | 49 | 202 | 139 | 291 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000000000007 | 56 | 155 | 112 | 213 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000001 | 59 | 156 | 188 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.0000000002 | 49 | 156 | 109 | 224 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 109 | 58 | 166 | 0 |
| FG470156 | 135 | 59 | 192 | 0 |
| FG468822 | 135 | 59 | 192 | 0 |
| FG468635 | 135 | 59 | 192 | 0 |
| FG468869 | 108 | 59 | 166 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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