Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g041973m |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41932.1 Isoelectric Point: 8.8494 |
Chromosome | Chromosome/Scaffold: 00180 Start: 204729 End: 206848 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 376 | 0 |
WAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITF DWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWG VNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGN PCRGIILQDIKLTYMNKAAATSSCKNIG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MAAKLLISCI LSLFLTFFFK PSNAAYNVID LGAKSDGETD STQAFLKAWA AACSSVKAST 60 IYVPTGRYLI KNIVFRGPCK NKIAIQIKGT IVAPTDYHVI GKTGNWILFV QVDRVSVIGG 120 TLDAQGAGFW ACRKSGQNCP VGSRSITFDW ASNVMISGLT SINSQLIHLA INSCKNVIVR 180 NVKLIAPDES PNTDGIHIQS STGVKITGSI MQTGDDCISI GPGTRNLYMS SIKCGPGHGV 240 SIGSLGWGVN EDGVENVTLT NSRFTGSDNG VRIKSWARPS NSFVRNVLFQ NIIMKNVQNP 300 ILIDQNYCPH NQCPHQASGV KISQVTYRNI QGTSATAEAV TFDCSPGNPC RGIILQDIKL 360 TYMNKAAATS SCKNIGGMSS GVLMPESCLY EG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-95 | 53 | 375 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-96 | 27 | 386 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-98 | 28 | 389 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-111 | 20 | 388 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-172 | 10 | 389 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 3 | 389 | 2 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 3 | 389 | 2 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 3 | 389 | 2 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 1 | 389 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 389 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-20 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-20 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-20 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-20 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-20 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |