| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g041993m |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 41469 Isoelectric Point: 8.5813 |
| Chromosome | Chromosome/Scaffold: 00180 Start: 99913 End: 101403 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 380 | 0 |
| ANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGF SNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKD LNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSK YPCSRIRLEDVKLTYKNQPAAASCSHADGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MCYFHFLISI LLLSIFNTSS LAAPPSYNVV SFGAKPDGRT DSTKAFLSAW ANACGSPRAA 60 TIYVPPGRFF LRNVAFQGPC KNNRITIRID GTLVAPSDYR VIGNAGNWLF FQHVDGVTLN 120 SGILDGQGTA LWACKNSGKN CPSGATSMGF SNCNNIAING LTSLNSQMYH VVFNGCNNVK 180 LKGVKVLASG NSPNTDGIHV QLSSDVTILN TRISTGDDCV SIGPGTSNLW IENVACGPGH 240 GISIGSLGKD LNEAGVQNVT VKTVTFTGTQ NGLRIKSWGR PSNGFARNIL FRNAIMKNVQ 300 NPIIIDQNYC PDNIGCPGQV SGVKISDVTY QDVHGTSATE VAVNFDCSSK YPCSRIRLED 360 VKLTYKNQPA AASCSHADGS ASGLVQPKGC L* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam00295 | Glyco_hydro_28 | 7.0e-90 | 54 | 382 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 4.0e-91 | 23 | 388 | 376 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 1.0e-102 | 29 | 391 | 371 | + Probable polygalacturonase |
| PLN02188 | PLN02188 | 4.0e-110 | 22 | 390 | 375 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 2.0e-147 | 22 | 391 | 371 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 6 | 391 | 8 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABC72324.1 | 0 | 6 | 391 | 8 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 6 | 391 | 8 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| GenBank | ABV32553.1 | 0 | 6 | 391 | 8 | 393 | endopolygalacturonase [Prunus persica] |
| RefSeq | XP_002529090.1 | 0 | 4 | 391 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-20 | 118 | 364 | 108 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 3e-17 | 19 | 363 | 13 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1czf_B | 0.00000000000003 | 194 | 374 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.00000000000003 | 194 | 374 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.0000000000001 | 124 | 374 | 84 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
