Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g042619m |
Family | AA7 |
Protein Properties | Length: 403 Molecular Weight: 45658.7 Isoelectric Point: 9.3068 |
Chromosome | Chromosome/Scaffold: 00159 Start: 260512 End: 261720 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA7 | 1 | 177 | 0 |
LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIR GGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTS |
Full Sequence |
---|
Protein Sequence Length: 403 Download |
LAKLRSIEVD INNKTAWVQA GATIGELYYR ISEKSNIHGF AAGLCPSVGI GGHITGGGYG 60 TMMRKYGLAA DNVVDARIVD ARGRILDREA MGEDLFWAIR GGGGGSFGII LAWKVKLVPV 120 PATVTVFTVS KTLEQGATKI LYKWQQVADK LDEDLFIRVI IKLANAGPKG KRTVTTSYNA 180 LFLGDSERLL QVMHMWFPEL GLTRNDCIET SWIRSVLYIA DFQNNTEPEI LLEAEFLFKN 240 YFKAKSDFVK EPIPESVLEG LWKMLLEEDN PVMIWNPYGG MMSKISEYEI PFPHRKGNIF 300 KIQYLTLWKD GDQKNATKHN GWIRRLYDYM APYASIFPRA AYVNYRDLDL GLNKKFNTSY 360 TEASAWGTKY FKDNFNRLVR VKIKVDPDNI FRHEQSIPPV PL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 6.0e-8 | 1 | 117 | 128 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 8.0e-12 | 1 | 87 | 88 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 7.0e-18 | 341 | 398 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN81654.1 | 0 | 1 | 401 | 130 | 528 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268361.1 | 0 | 1 | 401 | 130 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299030.1 | 0 | 1 | 401 | 108 | 507 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317089.1 | 0 | 1 | 402 | 131 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523164.1 | 0 | 1 | 401 | 133 | 532 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 1 | 401 | 105 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 1 | 400 | 108 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 1 | 400 | 108 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 1 | 400 | 106 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 1 | 400 | 106 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CF355577 | 271 | 131 | 401 | 0 |
GR924372 | 293 | 62 | 354 | 0 |
HO777438 | 405 | 1 | 398 | 0 |
DW224985 | 269 | 134 | 402 | 0 |
CX668319 | 276 | 34 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|