Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g042768m |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42335.3 Isoelectric Point: 8.2017 |
Chromosome | Chromosome/Scaffold: 05106 Start: 3023 End: 4527 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 385 | 0 |
WAAACASTESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLS FTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK DLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSATPIAIKFDCSP KYPCQGIRLQNINLRHLKQEAQSSCNNVIG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MERLFSSLFS SLFIILFILS INLASSYATT TTYNVLSFGA KGNGVTDSTQ AFAKAWAAAC 60 ASTESATLYV PKGRYLLGSV AFNGDCKSSD ITFRIDGTLV APADYRVLGQ ADNWLSFEGV 120 SGVSIIGGAL DAKGSSLWAC KASGTNCPDG ATTLSFTNSN NIRINGLLSL NSQMFHIVIN 180 GCKDVHVEGV TVIAPGNSPN TDGIHVQLSM NVKITNCTIK TGDDCIPIGP GTKNLWIERV 240 TCGPGHGISI GSLAKDLVEE GVQNVTVFKT VFTGTTNGFR IKSWARPSNG FVQGVRFIDA 300 VMRNVQFPIV IDQNYCPHNL NCPGQVSGVK ISDVIYQDIR GTSATPIAIK FDCSPKYPCQ 360 GIRLQNINLR HLKQEAQSSC NNVIGKALGL VQPNSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-73 | 35 | 397 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-74 | 25 | 393 | 376 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-80 | 70 | 383 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-86 | 27 | 396 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-124 | 26 | 397 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002262690.1 | 0 | 26 | 397 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 10 | 397 | 7 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 397 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 8 | 397 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 3 | 397 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-20 | 154 | 369 | 154 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-17 | 24 | 369 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000002 | 58 | 383 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000002 | 58 | 383 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000002 | 58 | 383 | 1 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |