y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g043061m |
Family | GH28 |
Protein Properties | Length: 299 Molecular Weight: 32979.3 Isoelectric Point: 9.4065 |
Chromosome | Chromosome/Scaffold: 00003 Start: 4259023 End: 4260615 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 298 | 0 |
EEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYG CKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNS EAFVSNVLVNRARLSGTTNGVRIKTW |
Full Sequence |
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Protein Sequence Length: 299 Download |
FSSYQGDRFV TTRDQYRRFG SPIWVDSESE TTLMRLYGRA SAPASSTKIV NVDDFEAKAD 60 GTDDSKAFME AWEEACSSEN EAVLVVPNNK IYHLKPITFS GPCKSDLTMK IYGTIKASVR 120 LSDYSRDPRH WLVFENVNNF RVEGGGTIDG NGKVWWRKSC KVNKSLAVTF YGCKNVRVSS 180 LRFRNSQKMH LTFQYCVNVR ALNLLVIAPG NSPNTDGIHV TGTQNILIKN CVIRTGDDCI 240 SIVSGSKNVR ATDIICGPGH GISIGSLGAG NSEAFVSNVL VNRARLSGTT NGVRIKTWQ 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-63 | 45 | 299 | 257 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-65 | 38 | 299 | 270 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-77 | 76 | 299 | 229 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-96 | 28 | 299 | 283 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-98 | 15 | 299 | 295 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 19 | 299 | 54 | 343 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF21207.1 | 0 | 42 | 299 | 63 | 326 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187454.2 | 0 | 42 | 299 | 63 | 327 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 42 | 299 | 1 | 265 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 39 | 299 | 69 | 336 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000004 | 139 | 297 | 110 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000006 | 145 | 297 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000006 | 145 | 297 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000006 | 145 | 297 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000006 | 145 | 297 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX667359 | 237 | 4 | 233 | 0 |
CX666078 | 203 | 4 | 199 | 0 |
EX261408 | 262 | 45 | 299 | 0 |
EH769463 | 244 | 63 | 299 | 0 |
EY506372 | 260 | 48 | 299 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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