Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g043588m |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42331.3 Isoelectric Point: 8.3194 |
Chromosome | Chromosome/Scaffold: 00011 Start: 1586809 End: 1588323 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 385 | 0 |
WDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLR FTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK DLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCST KYPCQGIKLQNINLRHLKQVAQSSCNNVIG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MERLFSSLFS SLFIILFILS INLASSYATT TTYNVLSFGA KGNGVTDSTQ AFAKAWDAAC 60 TSTESATINV PKGRYLLGSV AFKGDCKSSD ITFRIDGTLV APADYRVLGQ ADNWLSFEGV 120 SGVSIIGGAL DAKGSSLWAC KASGANCPDG ATTLRFTNSN NIRINGLLSL NSQMFHIVIN 180 GCKDVHIEGV TVIAPGNSPN TDGIHVQLST NVKITNCTIK TGDDCIPIGP GTKNLWIERV 240 TCGPGHGISI GSLAKDLIEE GVQNVTVFKT VFTGTTNGFR IKSWARPSNG FVQGVSFIDA 300 IMRNVQFPIV IDQNYCPHNL NCPGQVSGVK INDITYQDIR GTSATPIAIK FDCSTKYPCQ 360 GIKLQNINLR HLKQVAQSSC NNVIGKALGL VQPNSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-81 | 60 | 383 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-82 | 25 | 393 | 376 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-84 | 35 | 397 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-97 | 27 | 396 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-135 | 26 | 397 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002262690.1 | 0 | 26 | 397 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 10 | 397 | 7 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 397 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 8 | 397 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 3 | 397 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 154 | 369 | 154 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 7e-18 | 24 | 369 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000000004 | 58 | 383 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000004 | 58 | 383 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000004 | 58 | 383 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |