PlantCAZyme

Basic Information
Species	Citrus sinensis
Cazyme ID	orange1.1g045207m
Family	AA7
Protein Properties	Length: 351 Molecular Weight: 39245.3 Isoelectric Point: 6.6758
Chromosome	Chromosome/Scaffold: 00008 Start: 2431917 End: 2433120
Description	FAD-binding Berberine family protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
AA7	1	167	0
KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAA DHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQYIA

Full Sequence
Protein Sequence Length: 351 Download
KHGLEIRVRG GGHYFEGVSY VSNVPLIIID LINLSSINVD VENEIACVQS SATIGQLYYK 60 IAEKSKILAF LAGICHSVGV DGHFSGRGYG LLLRKYGLAA DHVVDAHLID VEGRFLDRES 120 MGEDLFWAIL VGGGASFGVI IAWKIKLVTV PQTVTVFTIL NKWQYIADKL DEDLILRIFL 180 RRLVDATAKG KRTMQALFSG LFLGGVDRLL PLMDQSFHVL GLVKQDCIEL SWIKSVLCFA 240 GFQKRESRDV LLERTTILEG GKMSEISESK IPFRHRAGNI CQIEHLVVWA EEGIEASQRH 300 INWIGELYSY LTPYVSKDPR EAYINYKDLD IGMNNEGYTT NYKQASIWGV * 360

Full Sequence

Protein Sequence Length: 351 Download

KHGLEIRVRG GGHYFEGVSY VSNVPLIIID LINLSSINVD VENEIACVQS SATIGQLYYK    60
IAEKSKILAF LAGICHSVGV DGHFSGRGYG LLLRKYGLAA DHVVDAHLID VEGRFLDRES    120
MGEDLFWAIL VGGGASFGVI IAWKIKLVTV PQTVTVFTIL NKWQYIADKL DEDLILRIFL    180
RRLVDATAKG KRTMQALFSG LFLGGVDRLL PLMDQSFHVL GLVKQDCIEL SWIKSVLCFA    240
GFQKRESRDV LLERTTILEG GKMSEISESK IPFRHRAGNI CQIEHLVVWA EEGIEASQRH    300
INWIGELYSY LTPYVSKDPR EAYINYKDLD IGMNNEGYTT NYKQASIWGV *             360

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG0277	GlcD	3.0e-5	1	156	163	+ FAD/FMN-containing dehydrogenases [Energy production and conversion]
pfam01565	FAD_binding_4	7.0e-8	1	117	117	+ FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.

Gene Ontology
GO Term	Description
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity
GO:0016491	oxidoreductase activity
GO:0050660	flavin adenine dinucleotide binding
GO:0055114	oxidation-reduction process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	XP_002299022.1	0	1	350	90	491	predicted protein [Populus trichocarpa]
RefSeq	XP_002317084.1	0	1	349	82	481	predicted protein [Populus trichocarpa]
RefSeq	XP_002330609.1	0	1	349	98	498	predicted protein [Populus trichocarpa]
RefSeq	XP_002332196.1	0	1	350	90	492	predicted protein [Populus trichocarpa]
RefSeq	XP_002334045.1	0	1	350	97	496	predicted protein [Populus trichocarpa]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3vte_A	0	1	349	75	480	A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa
PDB	4dns_B	0	1	349	76	463	A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB	4dns_A	0	1	349	76	463	A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB	3tsj_B	0	1	349	74	463	A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB	3tsj_A	0	1	349	74	463	A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens

EST Download unfiltered results here

Hit	Length	Start	End	EValue
HO777438	407	1	350	0
DC894588	313	99	349	0
DY272344	339	62	350	0
CX666381	303	101	349	0
DY262774	330	48	327	0

Orthologous Group
Species	ID
Citrus clementina	Ciclev10002058m	Ciclev10017593m	Ciclev10018258m
Malus domestica	MDP0000268860.298.476	MDP0000268860.298.476

CAZyme Information