Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g045402m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42263.3 Isoelectric Point: 8.6941 |
Chromosome | Chromosome/Scaffold: 00011 Start: 1594135 End: 1595661 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 384 | 0 |
WAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTL SITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLG KDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCS AKYPCEGIRLYKVNLSYLKLVAQSSCNNVIG |
Full Sequence |
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Protein Sequence Length: 397 Download |
MAKFLISLIF SIFLFTVSNN LNPSAATSSV YNVLRFGAKG NGVIDSTEAF AKAWAAACAS 60 NESTIIYVPK GRYLLGSVAF KGECQSSDIT FQIDGTLVAP ADYRVLGQAD NWLSFEGVSG 120 VSIIGGALDA KGTSLWACKA AAGTTCPNGA TTLSITNSNN VSIKGLLSLN SQMYHIVINR 180 CQDVLVEGAK IIAAGDSPNT DGIHIQQSRN VKIRSSSIKT GDDCISIGRG TNNLWIERVT 240 CGPGHGISIG SLGKDMDEEG VQNVTVWKTV FTGTQNGLRI KSWARPSNGF VKGVRFIDAV 300 MQNVQNPIII DQNYCPHNLN CPGQVSGVKI SDIIYWNIRG TSSTPIAIKF NCSAKYPCEG 360 IRLYKVNLSY LKLVAQSSCN NVIGKALGIV QPNTCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-83 | 24 | 392 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 66 | 382 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-83 | 30 | 396 | 374 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-92 | 26 | 395 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-128 | 21 | 396 | 377 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 29 | 396 | 20 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 22 | 396 | 23 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 5 | 396 | 8 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 5 | 396 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 396 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-21 | 125 | 378 | 124 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-16 | 56 | 314 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-16 | 56 | 314 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-16 | 56 | 314 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-16 | 56 | 314 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |