y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g045893m |
Family | GH28 |
Protein Properties | Length: 328 Molecular Weight: 35309.1 Isoelectric Point: 7.8489 |
Chromosome | Chromosome/Scaffold: 00077 Start: 386290 End: 387662 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 17 | 299 | 0 |
WKEACTSENPSTVVISKGNYMVGSVTFKGPCKSPITLHIEGKLKAPVELERLSSQDGWIVFQDIDGLQVSGGGTFDGQGSAAWAKNDCRKTGKCNSLPIN LRFSSVTNSKMQDVTSLNSKLFHINILNCKNLSLQHISINAPANSLNTAGIHIGRSNGVHITDADIKTGDDCVSLGDGSQQISIEKVTCGPGHGISVDTL GRYHDEQPVNGVTVRNCTLKNTMNGVRVKTWPDSPSGVASEMTFEDIIMDNVSNPILIDQKYCPYGIQCRNVHIGNIHLTYTP |
Full Sequence |
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Protein Sequence Length: 328 Download |
MEQRPMATQM IAIASAWKEA CTSENPSTVV ISKGNYMVGS VTFKGPCKSP ITLHIEGKLK 60 APVELERLSS QDGWIVFQDI DGLQVSGGGT FDGQGSAAWA KNDCRKTGKC NSLPINLRFS 120 SVTNSKMQDV TSLNSKLFHI NILNCKNLSL QHISINAPAN SLNTAGIHIG RSNGVHITDA 180 DIKTGDDCVS LGDGSQQISI EKVTCGPGHG ISVDTLGRYH DEQPVNGVTV RNCTLKNTMN 240 GVRVKTWPDS PSGVASEMTF EDIIMDNVSN PILIDQKYCP YGIQCRNVHI GNIHLTYTPQ 300 GTAFSECTNV RPVVSGRVVP RACFKNT* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-62 | 12 | 279 | 273 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-65 | 12 | 291 | 281 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-69 | 12 | 306 | 304 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-94 | 21 | 282 | 262 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-111 | 12 | 309 | 337 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 27 | 323 | 102 | 437 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 27 | 323 | 101 | 436 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 27 | 323 | 102 | 437 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187442.1 | 0 | 27 | 323 | 101 | 436 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
RefSeq | XP_002274096.1 | 0 | 12 | 323 | 45 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-16 | 83 | 278 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 83 | 278 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-16 | 83 | 278 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-16 | 83 | 278 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-16 | 83 | 278 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG525413 | 257 | 27 | 282 | 0 |
EW731960 | 264 | 12 | 274 | 0 |
CU617067 | 276 | 2 | 277 | 0 |
EG525404 | 251 | 27 | 276 | 0 |
EC987202 | 260 | 12 | 271 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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