Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g046362m |
Family | GH28 |
Protein Properties | Length: 335 Molecular Weight: 36588.6 Isoelectric Point: 8.1362 |
Chromosome | Chromosome/Scaffold: 00003 Start: 1575447 End: 1577366 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 3 | 299 | 0 |
GTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIK VKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQG GIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNS |
Full Sequence |
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Protein Sequence Length: 335 Download |
IDGTLLAPPK VGSWPKSSLF QWINFKWLHN FTIQGNGIVD GQGFEWWGGS QSNSIQKKSK 60 HIPEMKPTAL RFYASYNVTV RDIKINNSPL CHLKFDSSGG IKVKNIHISS PENSPNTDGI 120 HLQNTKDVEI QHSDIACGDD CVSIQTGCSN VHIHHISCGP GHGISLGGLG KDKSVACVSD 180 IVVEKISLQN TLAGVRIKTW QGGIGSVKNV SFSSIQVWDV KVPIIIDQYY CDKHLCNNQT 240 GAVAISGVEF NQIIGTYSVQ PIHLACSNSV PCSDVDLIDI QLKPSSKYQS FQQALCWNSY 300 GKSQAPLVPS SIDYCLRRDS GSVKRIARSH EHMC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-49 | 3 | 303 | 306 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-50 | 22 | 286 | 269 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-57 | 1 | 309 | 313 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-62 | 1 | 282 | 283 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-69 | 1 | 330 | 332 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 1 | 334 | 128 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 1 | 334 | 143 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 1 | 334 | 143 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 1 | 323 | 62 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 334 | 144 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 30 | 237 | 110 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 9e-17 | 39 | 268 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-17 | 39 | 268 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-17 | 39 | 268 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-17 | 39 | 268 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH768189 | 239 | 1 | 239 | 0 |
DR581859 | 254 | 63 | 316 | 0 |
GO844129 | 278 | 1 | 272 | 0 |
ES800057 | 311 | 1 | 287 | 0 |
AJ808309 | 236 | 62 | 297 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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