Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g046411m |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41879.1 Isoelectric Point: 10.4023 |
Chromosome | Chromosome/Scaffold: 00180 Start: 194741 End: 196894 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 380 | 0 |
AVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITIN SANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDL NEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSN PCRGIKLQDIKLTYMNKAATSTCKNIGG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MAAAKLITIS CVVSVFLIFF ITLSNAASYN VITFGAKPDG RTDSTQSFLR AWAVACRSSQ 60 ASTIVVPKGR YLIKNAVFRG PCKSRITVQI SGTIVAPNDY RALGKSDRWI LFIKVDRLSI 120 IGGTLDGKGA GFWACRKSGR NCPVGTRSIT INSANNVIVS GLTSINSQLS HLVISSCNNV 180 IVRNVKFIAP AESPNTDGIH VESSTGVTIT GGTIQTGDDC ISVGRGTRNL HMSNIKCGPG 240 HGVSIGSLGK DLNEDGVENV TLTNSVFTGS DNGVRIKSWA RPSRSFVRNV FFQNIIMRNV 300 KNPILIDQNY CPNNQGCPNK NSGVKISQVT YRNIQGTSAT PKAVAFDCSS SNPCRGIKLQ 360 DIKLTYMNKA ATSTCKNIGG TISGVIMPRS CL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-85 | 56 | 378 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-91 | 22 | 389 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-94 | 31 | 392 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-99 | 24 | 391 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-167 | 17 | 392 | 380 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 4 | 392 | 2 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 13 | 392 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 4 | 392 | 2 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 4 | 392 | 2 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 4 | 392 | 2 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 107 | 365 | 100 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 8e-20 | 122 | 378 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 8e-20 | 122 | 378 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 8e-20 | 122 | 378 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 8e-20 | 122 | 378 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |