Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g046660m |
Family | AA7 |
Protein Properties | Length: 475 Molecular Weight: 53004.5 Isoelectric Point: 8.8546 |
Chromosome | Chromosome/Scaffold: 00010 Start: 27513 End: 28937 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 9 | 461 | 0 |
RFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQLYYRIAEGSKNLG FPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATK IVHEWQYIANKLHEGLFIDVVLIRANSTMVAAFTSLFLGGIDRLLPLMQESFPELGLKKEDCTEMSWIESAHTLAGFQKEEPLHFLLDRNSSSSKGFFKA KSDYVKQPIPESAFEGIYDRFAEEEGQSAVIALIPYGGKMNEISESEIPFPHRAGNIYKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLN YRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 475 Download |
LNFTIQNFRF STANTPKPQV IITPLHVSHV QAAIKCSQKH GLQIRIRSGG HDFEGLSYVS 60 DHVPFVIIDL IKLSEINVDA EEKTAWVQAG ATLGQLYYRI AEGSKNLGFP AGSCHTVGVG 120 GHFSGGGYGF MMRKFGLAAD HVVDAHLVDA EGRLLDRKSM GEDLFWAIRG GGGASFGVVV 180 AWKVRLVTVP STVTLFTVIR TMKQNATKIV HEWQYIANKL HEGLFIDVVL IRANSTMVAA 240 FTSLFLGGID RLLPLMQESF PELGLKKEDC TEMSWIESAH TLAGFQKEEP LHFLLDRNSS 300 SSKGFFKAKS DYVKQPIPES AFEGIYDRFA EEEGQSAVIA LIPYGGKMNE ISESEIPFPH 360 RAGNIYKILY LVAWGEDGAS QRYINWIRKL YGYTTPYVSN NPREAYLNYR DLDIGTNNHG 420 YTSYKQASIW GKKYFKNNFD RLVHVKTTVD PHNFFRNEQS ILPLPSRAPK KIGA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 4.0e-11 | 18 | 213 | 206 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 1.0e-16 | 405 | 461 | 57 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 4.0e-26 | 18 | 156 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299045.1 | 0 | 1 | 466 | 61 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330608.1 | 0 | 1 | 466 | 63 | 535 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330609.1 | 0 | 1 | 466 | 61 | 533 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330610.1 | 0 | 1 | 466 | 61 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 1 | 466 | 52 | 526 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 1 | 465 | 37 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 4 | 464 | 41 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 4 | 464 | 41 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 1 | 464 | 36 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 1 | 464 | 36 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777438 | 474 | 1 | 461 | 0 |
DC894588 | 336 | 138 | 464 | 0 |
CX046065 | 239 | 234 | 464 | 0 |
CX666381 | 321 | 140 | 449 | 0 |
EY875548 | 245 | 205 | 441 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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