Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g047296m |
Family | GH28 |
Protein Properties | Length: 332 Molecular Weight: 35515.1 Isoelectric Point: 8.7287 |
Chromosome | Chromosome/Scaffold: 00180 Start: 24981 End: 26352 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 27 | 318 | 0 |
WAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILIN GLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRN ILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVS |
Full Sequence |
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Protein Sequence Length: 332 Download |
MVTYNVISLG AKSDGQTDST KAFLAAWAKA CGSTAASTIY VPPGRYLLHN VVFQGQCRNN 60 DITIHAGNWI LFEHVNGVYI YGGILDGQGA GLWARKRSGN NNCPSGAKES WKIILGFSNS 120 NNILINGLTS QNSQMFHVVI NGCHNVKVQG MRVSASGNSP NTDGIHVQSS SDVTILNARI 180 GTGDDCVSVG HGISIGSLGK EVHEAGVQNV TVKYSWGRPS TGFSRNILFQ HAVMKSVDNP 240 IVIDQNYCRD NKNCPGKASG VKISDVTYQD IHGTSVTKVV VKIDCSQKYP CSGIKFEDVK 300 LIYKNQPAEA SCRNADVSAS GFVQPNSCLR L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-60 | 6 | 329 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-65 | 3 | 325 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-65 | 31 | 320 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-82 | 3 | 328 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-101 | 2 | 329 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 2 | 329 | 26 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 2 | 329 | 26 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABV32553.1 | 0 | 2 | 329 | 26 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002309718.1 | 0 | 4 | 329 | 28 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 4 | 329 | 29 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000001 | 80 | 301 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000002 | 3 | 315 | 20 | 353 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.00000002 | 24 | 323 | 11 | 325 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 0.000004 | 161 | 312 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000004 | 161 | 312 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 322 | 2 | 278 | 0 |
FC899369 | 302 | 2 | 258 | 0 |
DY268186 | 318 | 2 | 274 | 0 |
JZ191937 | 294 | 65 | 329 | 0 |
DY287541 | 304 | 2 | 260 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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