Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g047315m |
Family | GH28 |
Protein Properties | Length: 418 Molecular Weight: 44578.9 Isoelectric Point: 8.7337 |
Chromosome | Chromosome/Scaffold: 00023 Start: 1324652 End: 1326699 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 406 | 0 |
KEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPT NVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGS LGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVAL ECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAK |
Full Sequence |
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Protein Sequence Length: 418 Download |
MNTELDSKLL LVLFIICFSD AFAGGSRTMI AQVKNIHYKE TSSLLVNVKD FGARADGRTD 60 DSKAFEAAWK EACETTGAVT LLVPHGTYLI GPIKFAGPCK NVSNITVQMK GYLIASTNLS 120 EYRFGAGWVE FGGVEGLTLT GGGTFDGRGA KAWPYNGCPT HFNCKLLPTN VKFVAMKKTI 180 VRRITSVNSK SFHIALVECK NFRGSKIKIS APANSPNTDG IHIERSSSVH VSRSHIGTGD 240 DCISVGQGNS EVTIASITCG PGHGISVGSL GRYPNEGDVR GLVVRDSTMT GTMNGVRIKT 300 WANSPGSSAA TNMTFENIIM NNVSNPIIID QAYCPFTSCP TKPPSRVKLS DIYFKNIRGT 360 SSSAVAVALE CSKGIPCQNI YLENVHLDLS SGEKQPTSSC KNVEAKYIGT QVPPPCA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-76 | 36 | 416 | 383 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-85 | 9 | 416 | 415 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-89 | 46 | 416 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-91 | 73 | 403 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 9 | 417 | 409 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 64 | 416 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 8 | 417 | 9 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 40 | 416 | 29 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 8 | 417 | 9 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 37 | 417 | 34 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-20 | 129 | 403 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 129 | 403 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 129 | 403 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 129 | 403 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-20 | 129 | 403 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |