Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g047322m |
Family | GH28 |
Protein Properties | Length: 343 Molecular Weight: 37143 Isoelectric Point: 10.4409 |
Chromosome | Chromosome/Scaffold: 00180 Start: 150523 End: 152184 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 338 | 0 |
WSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISF VGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAA LGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTS |
Full Sequence |
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Protein Sequence Length: 343 Download |
MAKLAVSCTL FIFFINTLFQ SASAAYNVIN FGAKPDGKSD ATQAFLRAWS SACYSNSPAT 60 LHVPRGLFLV KSISFNGPCR HRIVFQIDGT IIAPSSYWSL GNSGFWILFY KVNRLSIHGG 120 TIDATGAGYW ACRKSGKSCP PPTRSISFVG ASNIVVSGLT SINSRFFHIA IDECVNIMLR 180 KLKINAPSWS PNTDGIHIQS SSGITISNSA IMTGDDCISV GPGTKNLWIE RIACGPGHGI 240 RMKKALAALG PMLLKMVLKN VTVTDSIFTG TQNGVRIKTW ARPSNGFARN IRFRNIIMTK 300 VFNPIIIDQN YCPDNHCPHQ TSGVTISGVT YRNIKGTSAT PVA |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-80 | 28 | 340 | 324 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-81 | 53 | 343 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-82 | 22 | 343 | 329 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 8.0e-95 | 10 | 343 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-132 | 21 | 343 | 324 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002275740.1 | 0 | 1 | 343 | 1 | 340 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331632.1 | 0 | 4 | 343 | 5 | 340 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 343 | 1 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 1 | 343 | 1 | 340 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 1 | 343 | 1 | 340 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 46 | 311 | 44 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0000000000002 | 119 | 337 | 81 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0000000000002 | 119 | 337 | 81 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0000000000002 | 119 | 337 | 81 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.0000000000004 | 118 | 337 | 76 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |