y PlantCAZyme

CAZyme Information

Basic Information
SpeciesCitrus sinensis
Cazyme IDorange1.1g047599m
FamilyGH28
Protein PropertiesLength: 166 Molecular Weight: 17597.4 Isoelectric Point: 6.7801
ChromosomeChromosome/Scaffold: 00049 Start: 454322 End: 455039
DescriptionPectin lyase-like superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH2841141.6e-24
  SITYITSRDSKNFHFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTPNEKEAREITV
  QNCNLKGTSNG
Full Sequence
Protein Sequence     Length: 166     Download
MHGSITYITS RDSKNFHFNT FKINIQAPEN SPHTDGIHIA NSNNIQILNS EISTGDDCAS    60
MDPGSQNVNI SSNVKIWPSN VESISIRSLG GTPNEKEARE ITVQNCNLKG TSNGGTSSTK    120
VAVDLQCSKV KPRDKIELRD IDMACHGAGG GQAAVSNYSN VHGVA*                   180
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
PLN02218PLN022181.0e-1423131119+
PLN03003PLN030031.0e-152311997+
PLN03010PLN030104.0e-174119124+
pfam00295Glyco_hydro_287.0e-222114121+
PLN02188PLN021888.0e-238114115+
Gene Ontology
GO TermDescription
GO:0004650polygalacturonase activity
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACN85300.13e-212114174291exopolygalacturonase precursor [Oryza coarctata]
GenBankEAZ37619.11e-204114167282hypothetical protein OsJ_21954 [Oryza sativa Japonica Group]
RefSeqXP_002273801.16e-233122160284PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002437276.17e-224114164279hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1bhe_A0.0031257171224A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
CO41619611851144e-26
DT58195712121148e-22
FL76391711941142e-21
BQ57787412031146e-20
HO09137512181201e-19