Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g047738m |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42160.4 Isoelectric Point: 6.9862 |
Chromosome | Chromosome/Scaffold: 00396 Start: 63845 End: 68753 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 373 | 0 |
DACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSER APTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVEN ITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLE NIELQSATEGKGVLSSCKNA |
Full Sequence |
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Protein Sequence Length: 392 Download |
DLVGSMCILI LLSTLATHIN VNADDQNTFN VLNYGAVGNG NSDDSLAYAK AWNDACKANA 60 QTPTMIIPKG KTFLVHPITF SGPCKSSNIS IQLSGTIKAP DGPSAWTSEI GRWIAFGNIT 120 GLNINGRGLF DGNGQKWWDQ SCKHHPGKDC SERAPTAVSF IQCNNVHINE IYVERSPQVH 180 IVVDYSQDVH FKSLIIDSPE TSPNTDGIHI ARSHDVSVHT SIIAAVTYVN CGPGHGISIG 240 SLGKNGEEVK VENITVRHVN FCKTTNGARI KTWQAGKGQV QHVEFSYMNF TEVQNPIIID 300 QYYCDQKDVC AKTSTGVHIS DVRYLNATGT SATDVAINLD CSNNVACTDI KLENIELQSA 360 TEGKGVLSSC KNAFGVAKGN CKPKSCLKSN S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-80 | 27 | 377 | 370 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-81 | 28 | 386 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-82 | 28 | 384 | 374 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 2.0e-87 | 5 | 391 | 403 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-98 | 29 | 390 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 32 | 387 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
DDBJ | BAC57279.1 | 0 | 29 | 386 | 53 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 29 | 386 | 53 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002517618.1 | 0 | 26 | 361 | 8 | 351 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 140 | 390 | 450 | 720 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000001 | 124 | 359 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000005 | 129 | 360 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000005 | 129 | 360 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000005 | 129 | 360 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000005 | 129 | 360 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |