Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g048431m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42416.5 Isoelectric Point: 8.7441 |
Chromosome | Chromosome/Scaffold: 00011 Start: 1597682 End: 1599150 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 383 | 0 |
WAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTL SITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLA KDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCS TKYPCKGIRLHNVHLRHLKQEAKSSCNNVI |
Full Sequence |
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Protein Sequence Length: 397 Download |
MDKFFSTLLY AFLLVLGTNN LLHSSATSTI YNVLRCGAKG NGITDSTQAF AKAWAAACAS 60 NESATIYVPK GRYLLGSVAF RSECKSPSIT FLINGTLVAP TDYRVLGQAN NWLSFEGVSH 120 VSIIGGALDA KGTSLWACKT AAGSNCPNGA TTLSITKSNN IRINGLLSLN SQMYHIVINR 180 CQDVLVEGAK IIAAGDSPNT DGIHVQQSRN VIIKSSSIKT GDDCISIGPG TNNLWIERVT 240 CGPGHGISIG SLAKDLDEEG VQNVTVFKTV FTGTTNGLRI KSWARPSNGF VRGIRFIDAL 300 MQNVQHPIII DQNYCPHNLN CPGQISGVKI SDVIYQDIRG TSATPIAIKF DCSTKYPCKG 360 IRLHNVHLRH LKQEAKSSCN NVIGEALGLV QPNSCL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 1.0e-72 | 27 | 392 | 372 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 1.0e-73 | 65 | 382 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 7.0e-78 | 37 | 396 | 367 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 4.0e-84 | 3 | 395 | 401 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 8.0e-119 | 24 | 396 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002262690.1 | 0 | 24 | 396 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 6 | 396 | 9 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 6 | 396 | 10 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 5 | 396 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 8 | 396 | 8 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 153 | 368 | 154 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000009 | 125 | 382 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000009 | 125 | 382 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000009 | 125 | 382 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000009 | 125 | 382 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |