y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g048481m |
Family | CBM43 |
Protein Properties | Length: 306 Molecular Weight: 32294.2 Isoelectric Point: 8.2989 |
Chromosome | Chromosome/Scaffold: 00052 Start: 424349 End: 425949 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 237 | 306 | 1.3e-28 |
WCVAKPTVPDPIIQEAMNYACASGADCDTIQPSGTCFQPDTVYAHASYAFNSYWQRTKVAGGTCSFGGTA |
Full Sequence |
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Protein Sequence Length: 306 Download |
METNRNRKRV CILLLCLTMA ATFIPRCDAR RSMGLRKKGL RSIIKATKKL KLVKHIDGDP 60 SSNAGPYGVS SPFSLPPYDS LSPFPQPEIA PPFCIYPPGT PQPPSTAIPS PSEFTPIPPL 120 STPYIPPILP IESPPPSPTG VVPSPPESIP GPNPPEIVPS PPGLVPSPFT YIPSPPGPIL 180 SPPYYEPSPP SFTPSPPSSV PSPTGFAPSP PVFEPPVVYP PPTGPPSPKR GPSIALWCVA 240 KPTVPDPIIQ EAMNYACASG ADCDTIQPSG TCFQPDTVYA HASYAFNSYW QRTKVAGGTC 300 SFGGTA 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-24 | 236 | 306 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-33 | 236 | 306 | 71 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 2 | 306 | 6 | 245 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002264622.1 | 7.00649e-44 | 27 | 306 | 30 | 245 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002264966.1 | 0 | 1 | 306 | 1 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312230.1 | 0 | 61 | 306 | 3 | 284 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 0 | 62 | 306 | 4 | 246 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000001 | 226 | 306 | 5 | 82 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |