| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa002258m |
| Family | PL4 |
| Protein Properties | Length: 696 Molecular Weight: 79219.7 Isoelectric Point: 6.216 |
| Chromosome | Chromosome/Scaffold: 1 Start: 45919583 End: 45926792 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 51 | 663 | 0 |
| LQLHIREQDVVMDNGILQVTLSKPAGMVTGIQYNGVDNLLEILNEDSNRGYWDLVWDAPEIKRKKGEFDRMETTNFTVIVETENQIELSFTRMWDPSLEG KVVPLNIDKRFVMLRNSSGFYTYGIYEHLKDWPAFNLTNTRIGFKLRKDKFHYMAMSDNRQRYMPLPDDRTAERGQPLAYPEAVLLVNPVEPEFKGEVDD KYQYSIENKDNRVHGWISTVTDPPMGFWQITPSEEFKSGGPLKQCLTSHVGPITLAIFHSTHYSGADLILQFGPNEPWKKVFGPVFIHLNSLVNGDDPLK RLWEDAKQQMEVEVQSWPYDFPASKDFLPLDQRGSVSGRLLVHDRYISDEDLPGNGTLVGLAAPGDVGSWQFECKGYQFWTKADEKGCFSITGIRPGTYN LFAYVPGLIGDYRYEAEVTISPGSDKDVGILVYEPPRSGPTLWEIGIPDRTAAEFFVPDPNPKYINKLYLNHTDRFRQYGLWERYADLYPHNDMVYTVGV SDYRKDFFFAQVTRKTDNNTYQGSTWQIKFKLDIVDKNYTYKLRIALATAHVSDLQVRINDLRPSNPHFSTGPIGNDNTIARHGIHGLYRLYNVDVPGVQ LVEGNNTIFLTRT | |||
| Full Sequence |
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| Protein Sequence Length: 696 Download |
| MSTFHVRSGR EPKGDVFSVS KTWLSVKLCF IILLIQAVTF PAAAAQNITG LQLHIREQDV 60 VMDNGILQVT LSKPAGMVTG IQYNGVDNLL EILNEDSNRG YWDLVWDAPE IKRKKGEFDR 120 METTNFTVIV ETENQIELSF TRMWDPSLEG KVVPLNIDKR FVMLRNSSGF YTYGIYEHLK 180 DWPAFNLTNT RIGFKLRKDK FHYMAMSDNR QRYMPLPDDR TAERGQPLAY PEAVLLVNPV 240 EPEFKGEVDD KYQYSIENKD NRVHGWISTV TDPPMGFWQI TPSEEFKSGG PLKQCLTSHV 300 GPITLAIFHS THYSGADLIL QFGPNEPWKK VFGPVFIHLN SLVNGDDPLK RLWEDAKQQM 360 EVEVQSWPYD FPASKDFLPL DQRGSVSGRL LVHDRYISDE DLPGNGTLVG LAAPGDVGSW 420 QFECKGYQFW TKADEKGCFS ITGIRPGTYN LFAYVPGLIG DYRYEAEVTI SPGSDKDVGI 480 LVYEPPRSGP TLWEIGIPDR TAAEFFVPDP NPKYINKLYL NHTDRFRQYG LWERYADLYP 540 HNDMVYTVGV SDYRKDFFFA QVTRKTDNNT YQGSTWQIKF KLDIVDKNYT YKLRIALATA 600 HVSDLQVRIN DLRPSNPHFS TGPIGNDNTI ARHGIHGLYR LYNVDVPGVQ LVEGNNTIFL 660 TRTLSTSPFQ GIMYDYIRLE GPLSSKSNNL GFSSK* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-31 | 382 | 479 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-53 | 493 | 680 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-69 | 60 | 348 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-98 | 24 | 248 | 225 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002285626.1 | 0 | 62 | 689 | 1 | 622 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002527353.1 | 0 | 48 | 690 | 3 | 641 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 0 | 59 | 682 | 127 | 746 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 0 | 121 | 248 | 1 | 128 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 50 | 687 | 5 | 639 | lyase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3njx_A | 0.0003 | 404 | 660 | 256 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
| PDB | 3njv_A | 0.0003 | 404 | 660 | 256 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
| PDB | 2xhn_B | 0.0003 | 404 | 660 | 256 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 2xhn_A | 0.0003 | 404 | 660 | 256 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 1nkg_A | 0.0003 | 404 | 660 | 256 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
