| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa002905m |
| Family | PL4 |
| Protein Properties | Length: 623 Molecular Weight: 71274.2 Isoelectric Point: 5.6961 |
| Chromosome | Chromosome/Scaffold: 1 Start: 45812904 End: 45818301 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 1 | 599 | 0 |
| MDNGILQVTLSNPDGIVTGIRYNGIDNVLEPLNKETNRGYWDLVWSAPGSKGIFDVIKGTSFRVIVDNGEQVEVSFTRMWDPSLEGKYVPLNIDKRFVML RASSGFYSYAIYEHLKDWPDFEIGETRITFKLRKDKFQYMAVSDNRQRYMPLPDDRLPGRCQTLAYPEAVLLENPKMKELAGEVDDKYQYSCENKDNKVH GWICTNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSSAIKDDPFWLWEDAKIQMMTEVQSW PYSFPASEDFQKSDQRGNVSGRLLVLDRYICEELIPANGAYVGLAPPGDVGSWQRECKDYQFWMRADDRGYFSISNIRTGTYNLFAWVPGFIGDYRYDAV INITSGSFIEMGDLVFEPPRDGPTLWEIGIPDRSAAEFYVPDPDPNHINRLFVNHPDRFRQYGLWNRYAESYPHEDLVYIVGVSDYAKDWFFAQVPRQKE NGHEGTTWQIRFELRNVDRNSTYKLRVAIASATLAELQVRINDPNSRRPLFTSGLIGRDNSVARHGIHGIYWLYNVNVPGAQLVDGTNTFFFKQPRCTS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 623 Download |
| MDNGILQVTL SNPDGIVTGI RYNGIDNVLE PLNKETNRGY WDLVWSAPGS KGIFDVIKGT 60 SFRVIVDNGE QVEVSFTRMW DPSLEGKYVP LNIDKRFVML RASSGFYSYA IYEHLKDWPD 120 FEIGETRITF KLRKDKFQYM AVSDNRQRYM PLPDDRLPGR CQTLAYPEAV LLENPKMKEL 180 AGEVDDKYQY SCENKDNKVH GWICTNPPVG FWQITPSDEF RSGGPHKQNL TSHVGPTTLA 240 MFLSGHYAGQ DLVPKFRGGE PWKKVFGPVF IYLNSSAIKD DPFWLWEDAK IQMMTEVQSW 300 PYSFPASEDF QKSDQRGNVS GRLLVLDRYI CEELIPANGA YVGLAPPGDV GSWQRECKDY 360 QFWMRADDRG YFSISNIRTG TYNLFAWVPG FIGDYRYDAV INITSGSFIE MGDLVFEPPR 420 DGPTLWEIGI PDRSAAEFYV PDPDPNHINR LFVNHPDRFR QYGLWNRYAE SYPHEDLVYI 480 VGVSDYAKDW FFAQVPRQKE NGHEGTTWQI RFELRNVDRN STYKLRVAIA SATLAELQVR 540 INDPNSRRPL FTSGLIGRDN SVARHGIHGI YWLYNVNVPG AQLVDGTNTF FFKQPRCTSP 600 FQGLMYDYIR FEGPPSCGSS SS* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 1.0e-30 | 315 | 414 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 4.0e-51 | 426 | 612 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-74 | 1 | 276 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 5.0e-96 | 1 | 184 | 184 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 1 | 622 | 17 | 652 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 1 | 622 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 1 | 613 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002306520.1 | 0 | 1 | 615 | 1 | 616 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527352.1 | 0 | 1 | 614 | 17 | 631 | lyase, putative [Ricinus communis] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT552229 | 293 | 1 | 289 | 0 |
| GW864372 | 311 | 128 | 438 | 0 |
| DW479599 | 278 | 1 | 275 | 0 |
| DW479600 | 277 | 2 | 275 | 0 |
| DY293973 | 337 | 1 | 331 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
