Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa003422m |
Family | AA3 |
Protein Properties | Length: 577 Molecular Weight: 62524.2 Isoelectric Point: 8.1376 |
Chromosome | Chromosome/Scaffold: 5 Start: 9981559 End: 9984803 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 40 | 570 | 0 |
APDISYYDYIIVGGGTAGCPLAATLSQNYSVLLLERGGTPYGNPNITNVSAFGRALSDLSPTSPSQRFISEDGVINARARVLGGGSCLNAGFYSRAATDY AREAGWDTRLVNESYQWVERLVAFQPPIQAWQSAVRAGLVQAGVVPYNGFTYDHIYGTKVGGTIFDLEGHRHTAADLLQYANPTGLTVLLHATVHKILFR TKGKSRPLAHGVVFRDASGTKHRAYLKSGPTNEIIVSSGALGSPQLLMLSGVGPAEHLRAHNITVVVDQPLVGQGMSDNPMNAIFVPSPIPVEVSLIQVV GITHFGSYIEAASGENFAGSSATRDFGMFSPKIGQLSTVPPKQRTPEALAKAVEYMNSLEAPAFRGGFILEKVMGPISTGHLELRTRNPNDNPSVTFNYF KDPQDLERCIQGLETIEKIIESKPFSKFRYDYLSLAALLNITANSPINLLPKHANVSRSLDQFCKDTVMTIWHYHGGCQVGRVVDYQYKVLGVDALRVID GSTFIYSPGTNPQATVMMLGRYMGKRILDER |
Full Sequence |
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Protein Sequence Length: 577 Download |
MGFGWWKLFG AALVGILFFH GFCGAETAPN FSFMHNATTA PDISYYDYII VGGGTAGCPL 60 AATLSQNYSV LLLERGGTPY GNPNITNVSA FGRALSDLSP TSPSQRFISE DGVINARARV 120 LGGGSCLNAG FYSRAATDYA REAGWDTRLV NESYQWVERL VAFQPPIQAW QSAVRAGLVQ 180 AGVVPYNGFT YDHIYGTKVG GTIFDLEGHR HTAADLLQYA NPTGLTVLLH ATVHKILFRT 240 KGKSRPLAHG VVFRDASGTK HRAYLKSGPT NEIIVSSGAL GSPQLLMLSG VGPAEHLRAH 300 NITVVVDQPL VGQGMSDNPM NAIFVPSPIP VEVSLIQVVG ITHFGSYIEA ASGENFAGSS 360 ATRDFGMFSP KIGQLSTVPP KQRTPEALAK AVEYMNSLEA PAFRGGFILE KVMGPISTGH 420 LELRTRNPND NPSVTFNYFK DPQDLERCIQ GLETIEKIIE SKPFSKFRYD YLSLAALLNI 480 TANSPINLLP KHANVSRSLD QFCKDTVMTI WHYHGGCQVG RVVDYQYKVL GVDALRVIDG 540 STFIYSPGTN PQATVMMLGR YMGKRILDER LASDGN* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PRK02106 | PRK02106 | 2.0e-13 | 413 | 567 | 159 | + choline dehydrogenase; Validated |
PRK02106 | PRK02106 | 6.0e-33 | 46 | 317 | 324 | + choline dehydrogenase; Validated |
TIGR01810 | betA | 1.0e-36 | 47 | 568 | 577 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. |
COG2303 | BetA | 1.0e-45 | 46 | 573 | 574 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] |
PLN02785 | PLN02785 | 0 | 46 | 571 | 527 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34759.1 | 0 | 20 | 574 | 21 | 575 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001053612.1 | 0 | 30 | 575 | 33 | 585 | Os04g0573100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002282510.1 | 0 | 34 | 574 | 1 | 541 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298074.1 | 0 | 1 | 574 | 1 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509694.1 | 0 | 5 | 574 | 8 | 545 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 30 | 574 | 8 | 521 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 3gdp_A | 0 | 30 | 574 | 8 | 521 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 3gdn_B | 0 | 30 | 574 | 8 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 30 | 574 | 8 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 30 | 574 | 8 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |