Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa004002m |
Family | GH28 |
Protein Properties | Length: 537 Molecular Weight: 57834.5 Isoelectric Point: 8.5721 |
Chromosome | Chromosome/Scaffold: 1 Start: 25307219 End: 25311678 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 145 | 493 | 0 |
AAACKVEASQIIVPAAYKFLVGPISFSGPYCQPNILFQLDGTIVAPTDSKSWGKGLLQWLEFTKLRGITVQGKGLIDGRGSSWWQDTPYGDPIDDDFKLI VPLNSTAQQHPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCAGVLVHDMSVSSPGNSPNTDGIHLQNSKQVLIHTTNLACGD DCISIQTGCSDVYVHNVNCGPGHGISIGSLGRDNTKACVSNITVRDIIMHNTMNGVRVKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSQCKNQ TSAVALSGITYERIRGTYTVKPVHFACSDSLPCVDVTLNGIELKPVQEQ |
Full Sequence |
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Protein Sequence Length: 537 Download |
MSEFSFRSLT FMLLIALLVW SSNFEACMAR RGRHWRQSRA ASASSVSKKK GKGSHGGGSS 60 HHNSGGISGS KPKSPSHNKA PSPSHNKAPS PSHNKAPSPP QLPKPRDDTP PSTPHKGSSS 120 FNVLDFGAKG DGSTDDTKAF QAAWAAACKV EASQIIVPAA YKFLVGPISF SGPYCQPNIL 180 FQLDGTIVAP TDSKSWGKGL LQWLEFTKLR GITVQGKGLI DGRGSSWWQD TPYGDPIDDD 240 FKLIVPLNST AQQHPPMPIR SELSGKMPSI KPTALRFYGS FNVTVTGITI QNSPQCHLKF 300 DNCAGVLVHD MSVSSPGNSP NTDGIHLQNS KQVLIHTTNL ACGDDCISIQ TGCSDVYVHN 360 VNCGPGHGIS IGSLGRDNTK ACVSNITVRD IIMHNTMNGV RVKTWQGGSG SVQGVLFSNI 420 QVSEVQLPIV IDQFYCDKSQ CKNQTSAVAL SGITYERIRG TYTVKPVHFA CSDSLPCVDV 480 TLNGIELKPV QEQYHMYEPF CWQTFGELRT PTVPPIACLQ IGKPSSNRVN SDHDVC* 540 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 3.0e-74 | 112 | 488 | 384 | + polygalacturonase/glycoside hydrolase family protein |
PLN03010 | PLN03010 | 2.0e-77 | 121 | 487 | 372 | + polygalacturonase |
PLN02218 | PLN02218 | 7.0e-82 | 119 | 488 | 375 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 152 | 487 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 3.0e-99 | 101 | 519 | 424 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 536 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 4 | 536 | 7 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 536 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 536 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 536 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 129 | 438 | 19 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 9e-23 | 111 | 435 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-23 | 111 | 435 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-23 | 111 | 435 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-23 | 111 | 435 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |