Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa004996m |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52448.9 Isoelectric Point: 6.1079 |
Chromosome | Chromosome/Scaffold: 5 Start: 11188218 End: 11190931 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 434 | 0 |
QSDGGAQLFVPPGKWLTGSFNLTSHFTLYLHKDAVLLASQEESEWPVIEPLPSYGRGRDTDGGRFISLIFGTNLTDVVVTGDNGTIDGQGELWWQKFKKG ELKYTRPYLIEIMYSENIQISNLTLINSPSWNVHPVYSSNVLVQGITILAPVTSPNTDGINPDSCTNTKIEDCYIVSGDDCIAVKSGWDQYGIAFGMPTK QLVIRRLTCISPFSAVIALGSEMSGGIQDVRAENILAIDSESGVRIKTAVGRGGFVKDIYVRGVTMKTMKWAFWMTGNYGSHADNGYDPNALPVIQNINY HDMVAENVTMAAKLEGIPGDPFTGICISNVTITLAKKAKKLPWNCTDVAG |
Full Sequence |
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Protein Sequence Length: 483 Download |
MKLWKTPLTS QLSEMVMAIV VVVLLATTKG VKSRKAREDL DYFEYCAMSC RAHSASLAEF 60 GGVGDGSTSN TKAFQAAINH LSQYQSDGGA QLFVPPGKWL TGSFNLTSHF TLYLHKDAVL 120 LASQEESEWP VIEPLPSYGR GRDTDGGRFI SLIFGTNLTD VVVTGDNGTI DGQGELWWQK 180 FKKGELKYTR PYLIEIMYSE NIQISNLTLI NSPSWNVHPV YSSNVLVQGI TILAPVTSPN 240 TDGINPDSCT NTKIEDCYIV SGDDCIAVKS GWDQYGIAFG MPTKQLVIRR LTCISPFSAV 300 IALGSEMSGG IQDVRAENIL AIDSESGVRI KTAVGRGGFV KDIYVRGVTM KTMKWAFWMT 360 GNYGSHADNG YDPNALPVIQ NINYHDMVAE NVTMAAKLEG IPGDPFTGIC ISNVTITLAK 420 KAKKLPWNCT DVAGISSGVV PQACGLLVDQ GPSNVAACNF PEESLPIDNV QVQVCSYRRK 480 HL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-18 | 59 | 351 | 309 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-26 | 52 | 464 | 430 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-26 | 54 | 444 | 404 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 153 | 432 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-56 | 55 | 351 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002277736.1 | 0 | 1 | 477 | 1 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 28 | 482 | 27 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 1 | 481 | 1 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 1 | 476 | 1 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 1 | 482 | 1 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 53 | 420 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 53 | 420 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 53 | 420 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 53 | 420 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-16 | 67 | 353 | 22 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY257045 | 327 | 98 | 424 | 0 |
ES810566 | 340 | 142 | 481 | 0 |
CF512873 | 307 | 171 | 477 | 0 |
EY810524 | 299 | 85 | 383 | 0 |
DW138823 | 316 | 73 | 388 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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