| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa005185m |
| Family | GH28 |
| Protein Properties | Length: 474 Molecular Weight: 52275.8 Isoelectric Point: 8.6609 |
| Chromosome | Chromosome/Scaffold: 3 Start: 15173604 End: 15177085 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 421 | 0 |
| SASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILATQDESEWPLVPVLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGNNGTIDGQGISWWKKYKA GQLNETRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSNITIQGLTILAPIDSPNTDGIDPDSCSQTRIEDCFIVSGDDCIAVKSGWDQYGIKVGIPT EHLVIRRLTCISPDSATIALGSEMSGGIRDVRAEDITALSTQSSVRIKTAQGRGAYVKDIFVRRMTLKTMKYVFWMTGSYGSHPDPGFDPKALPLIQNIN YKQVEAENVTYSARLEGIPNDPFKGICISNVTITLTEKPKKLQWNCTNIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 474 Download |
| MSNVSGAIIF ILGLFFLRAA ECRTPANRGT VKYSALSCRR HSALLTDFGA VGDGKTSNTK 60 AFKAAIDHLS QSASDGGAQL IVPPGKWLTG SFNLTSHFTL FLHKDAVILA TQDESEWPLV 120 PVLPSYGRGR DAPGGRFSSL IFGTNLTDVV ITGNNGTIDG QGISWWKKYK AGQLNETRPY 180 MIEIMYSNQI QISNLTLVNS PSWFVHPIYS SNITIQGLTI LAPIDSPNTD GIDPDSCSQT 240 RIEDCFIVSG DDCIAVKSGW DQYGIKVGIP TEHLVIRRLT CISPDSATIA LGSEMSGGIR 300 DVRAEDITAL STQSSVRIKT AQGRGAYVKD IFVRRMTLKT MKYVFWMTGS YGSHPDPGFD 360 PKALPLIQNI NYKQVEAENV TYSARLEGIP NDPFKGICIS NVTITLTEKP KKLQWNCTNI 420 AGFEMYDFKK KEYVHMQGVF KKILPSLSRN PYRSTTPPYL IPFSILRVFD YEF* 480 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 3.0e-21 | 9 | 320 | 321 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02218 | PLN02218 | 1.0e-23 | 45 | 404 | 376 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 4.0e-26 | 141 | 420 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN03003 | PLN03003 | 3.0e-28 | 45 | 342 | 309 | + Probable polygalacturonase At3g15720 |
| COG5434 | PGU1 | 1.0e-54 | 45 | 339 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU17976.1 | 0 | 2 | 422 | 10 | 430 | unknown [Glycine max] |
| RefSeq | XP_002273669.1 | 0 | 9 | 422 | 19 | 431 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002327490.1 | 0 | 11 | 422 | 1 | 411 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 32 | 423 | 42 | 433 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 8 | 422 | 18 | 432 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000006 | 87 | 341 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
