Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005310m |
Family | GH28 |
Protein Properties | Length: 468 Molecular Weight: 51584.2 Isoelectric Point: 6.1098 |
Chromosome | Chromosome/Scaffold: 10 Start: 170228 End: 173148 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 419 | 0 |
TDKGGAKLFVPAGRWLTGSFHLISHLTLWLDKDAEILGSTNSDDWPVVEPLPSYGRGRELIGGRHQSLIYGRNLTDVIITGDNGTIDGQGSIWWNWFHNK TLNYTRPHLVELMNSTGIVISNLTFLNSPFWTIHPVYCSHVTVQNVTIIAPPKSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGISYGRPSR NIIIRRIAGKTETSAGIAIGSEMSGGVSEVHAENLHFFNSKTGIRIKTSPGRGGYVKNIFVSNVTLDGIDIAIRFTSHYGEHPDEFYDPNALPIIEQITF KDFVGKNIKTAGLLEGLEGDTFLDICLSNITLNVTSKSPWKCSSIQ |
Full Sequence |
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Protein Sequence Length: 468 Download |
MRRSSTLVDV FLLLALFSGA PWAVKGSPHC SKRANTGEIR PHSVTITEFG AVGDGVTLNT 60 KAFQNAIFYL NSFTDKGGAK LFVPAGRWLT GSFHLISHLT LWLDKDAEIL GSTNSDDWPV 120 VEPLPSYGRG RELIGGRHQS LIYGRNLTDV IITGDNGTID GQGSIWWNWF HNKTLNYTRP 180 HLVELMNSTG IVISNLTFLN SPFWTIHPVY CSHVTVQNVT IIAPPKSPNT DGIDPDSSDN 240 VCIEDCYIST GDDLIAIKSG WDEYGISYGR PSRNIIIRRI AGKTETSAGI AIGSEMSGGV 300 SEVHAENLHF FNSKTGIRIK TSPGRGGYVK NIFVSNVTLD GIDIAIRFTS HYGEHPDEFY 360 DPNALPIIEQ ITFKDFVGKN IKTAGLLEGL EGDTFLDICL SNITLNVTSK SPWKCSSIQG 420 YSDLVSPETC EPLKERISPE HYLDCYYLSD HIWISSNQNK GVQFLSW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-26 | 1 | 342 | 374 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-33 | 148 | 418 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-35 | 42 | 427 | 405 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 2.0e-68 | 23 | 398 | 399 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 467 | 1 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 467 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 446 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 435 | 1 | 426 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 17 | 467 | 27 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 38 | 402 | 22 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 38 | 402 | 22 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 38 | 402 | 22 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 38 | 402 | 22 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-23 | 88 | 419 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |