Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005391m |
Family | GH28 |
Protein Properties | Length: 464 Molecular Weight: 50159.2 Isoelectric Point: 4.6595 |
Chromosome | Chromosome/Scaffold: 1 Start: 8329296 End: 8331805 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 94 | 422 | 0 |
EACAVESGVVFAPADYSFKITSTIFSGPCQPGLVFQVDGILMPPEGPQTWPKGDSQKQWLVFYRLDKMTFTGSGTIEGNGQKWWDLPCKPHRGPNGSTLP GQCDSPALIRFFMSNNLVVKGLRIQNSPQFHMKFDGCEGVQIEKLSISSPKLSPNTDGIHIENTKSVGIYDSMISNGDDCISIGTGCANVDIRGVTCGPS HGISIGSLGVHNSQACVSNITVRDTIIRESDNGVRIKTWQGGTGCVSAIVFENIQMENVMNCLLVDQYYCLSKACRNETSAVYVTDLTYRNIKGTYDVRR PPIHFACSDTVACTNITLSEVELYPHEGE |
Full Sequence |
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Protein Sequence Length: 464 Download |
MIFQNSSNVE GRYHFHKRNK SSPAPSPDAG EPVAPSTPSL SPPPLPNVPS DPYPEDPGNN 60 SSGSSDCVFN VMNYGAVGDG SADDTAAFRA AWKEACAVES GVVFAPADYS FKITSTIFSG 120 PCQPGLVFQV DGILMPPEGP QTWPKGDSQK QWLVFYRLDK MTFTGSGTIE GNGQKWWDLP 180 CKPHRGPNGS TLPGQCDSPA LIRFFMSNNL VVKGLRIQNS PQFHMKFDGC EGVQIEKLSI 240 SSPKLSPNTD GIHIENTKSV GIYDSMISNG DDCISIGTGC ANVDIRGVTC GPSHGISIGS 300 LGVHNSQACV SNITVRDTII RESDNGVRIK TWQGGTGCVS AIVFENIQME NVMNCLLVDQ 360 YYCLSKACRN ETSAVYVTDL TYRNIKGTYD VRRPPIHFAC SDTVACTNIT LSEVELYPHE 420 GELMDDPFCW NAYGTQETAT IPPIDCLRDG EPESVAEVSQ YTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-71 | 62 | 447 | 388 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-80 | 56 | 443 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 116 | 416 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-88 | 70 | 416 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-110 | 64 | 451 | 395 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25976.1 | 0 | 91 | 463 | 3 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_175244.1 | 0 | 1 | 452 | 16 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 2 | 463 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 463 | 16 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 463 | 16 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-25 | 131 | 416 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-25 | 131 | 416 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-25 | 131 | 416 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-25 | 131 | 416 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-25 | 131 | 416 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 321 | 76 | 396 | 0 |
DY277859 | 362 | 59 | 417 | 0 |
CX663441 | 286 | 179 | 464 | 0 |
ES849368 | 313 | 115 | 424 | 0 |
GR169315 | 263 | 149 | 411 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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