Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005599m |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 49015 Isoelectric Point: 4.7763 |
Chromosome | Chromosome/Scaffold: 1 Start: 9620826 End: 9623551 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 419 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHWEVVEPLPSYGRGIELPGGRYRSLINGYMLHDVVITGDNGTINGQGSVWWDWFSSQT LNYSRPHLVEFVSSKYVVVSNLTFVNAPAYNIHPVYCSNVHVHNISVSAPPESPYTVGIVPDSSDNVCIEDCSIGMGYDAIALKSGWDEYGIAYGRPTTN VHIRRVYLQSSSGSSLAFGSEMSGGISDVFVEQVHIYNSFSGIQFRTTKGRGGYIREIIISDVEMENIHMAFGASGQFGSHPDDKFDPNALPDLDHITLQ DVIGTNITIAGSFTGIQESPFTSFCLSNISLSANSGSPTWECSNVSGS |
Full Sequence |
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Protein Sequence Length: 453 Download |
MKMLVVLLLL LTLSNAIDLG GEKDEKPCDY NLTLEPRPHS VSILEFGAVG DGRTLNTLAF 60 QNAIFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKGAVILGSQ DPSHWEVVEP 120 LPSYGRGIEL PGGRYRSLIN GYMLHDVVIT GDNGTINGQG SVWWDWFSSQ TLNYSRPHLV 180 EFVSSKYVVV SNLTFVNAPA YNIHPVYCSN VHVHNISVSA PPESPYTVGI VPDSSDNVCI 240 EDCSIGMGYD AIALKSGWDE YGIAYGRPTT NVHIRRVYLQ SSSGSSLAFG SEMSGGISDV 300 FVEQVHIYNS FSGIQFRTTK GRGGYIREII ISDVEMENIH MAFGASGQFG SHPDDKFDPN 360 ALPDLDHITL QDVIGTNITI AGSFTGIQES PFTSFCLSNI SLSANSGSPT WECSNVSGSS 420 DSVFPQPCSE FNSSYSSSCF SLLTANGKTA VL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-15 | 37 | 427 | 422 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-21 | 146 | 416 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-22 | 38 | 339 | 320 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-23 | 39 | 425 | 400 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 2.0e-47 | 41 | 380 | 369 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 14 | 428 | 12 | 427 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 428 | 1 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 16 | 437 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 450 | 1 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 14 | 452 | 12 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-32 | 31 | 333 | 16 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-32 | 31 | 333 | 16 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-32 | 31 | 333 | 16 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-32 | 31 | 333 | 16 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000004 | 85 | 417 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |