Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005602m |
Family | PL1 |
Protein Properties | Length: 453 Molecular Weight: 50307.4 Isoelectric Point: 9.1349 |
Chromosome | Chromosome/Scaffold: 3 Start: 19889721 End: 19891849 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 168 | 370 | 0 |
QPLWIIFARSMTIRLTQELILTSHKTIDARGANVRIAHGAGITLQFVQNVIIHGLHIHDIVPGSGGTIRDSVDHFGTRTQSDGDGISIFGSSHIWLDHLS MWNCGDGLIDVIQGSTAITISNCHFTRHNDVLLFGASDSFAGDAIMQITVAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSSHPTIISQGNR FIA |
Full Sequence |
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Protein Sequence Length: 453 Download |
MASKLDLVLF MISFCILVPS LRASIANDSN VGQFDAVWKE RELKAEKAAL KAYQPNPEKV 60 TDDFNESVQE FDDLNFEDDD QVSNITGRHL LGKKYKGPCK ATNPIDRCWR CRKDWANDRK 120 KLANCVKGFG RRTRGGKRGG FYVVTDPSDS NVVDPKPGTL RHAVIQPQPL WIIFARSMTI 180 RLTQELILTS HKTIDARGAN VRIAHGAGIT LQFVQNVIIH GLHIHDIVPG SGGTIRDSVD 240 HFGTRTQSDG DGISIFGSSH IWLDHLSMWN CGDGLIDVIQ GSTAITISNC HFTRHNDVLL 300 FGASDSFAGD AIMQITVAFN HFGKGLVQRM PRCRWGFIHV VNNDYTHWLM YAIGGSSHPT 360 IISQGNRFIA PPNHAAKEVT KRDYAPVDVW KNWQWRSEGD LMLNGAFFVE SGVAKKNHGF 420 GKLDMMTAKP GTFVTRLTRF AGTLGCRVGQ KC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-5 | 30 | 90 | 61 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-24 | 190 | 388 | 212 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-54 | 183 | 368 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-64 | 178 | 372 | 211 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 452 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 452 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 15 | 452 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330086.1 | 0 | 2 | 452 | 3 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 3 | 452 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 103 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 103 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 172 | 359 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 7e-16 | 186 | 368 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000003 | 175 | 380 | 132 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |