y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005744m |
Family | PL1 |
Protein Properties | Length: 447 Molecular Weight: 49890 Isoelectric Point: 9.0252 |
Chromosome | Chromosome/Scaffold: 1 Start: 26634972 End: 26636738 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 365 | 0 |
QKGPLWIIFARNMVIRLQQELLVTSDKTIDGRGANVNIHNGAGITLQFVKNVIITNLHIKKIVPKQGGMIRDSVDHIGRRTKSDGDGISIFGSSNVWIDH VSMENCADGLIDAIMGSTAITISNSHFTHHNDVMLFGASNSYTQDKIMQITVAFNHFGQGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSMNPTIISQG NRFIA |
Full Sequence |
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Protein Sequence Length: 447 Download |
MATINKSYFF LFFFFLSFAL VIASDTDGTD QEEVQLDIYW KQRAEEAKKE AMQSFETDPE 60 QVTEEFNSNV GELLMKQNGT RRHLRGNKKY NGPCMATNPM DACWRCDKNW AKNRKRLADC 120 VQGFGKKTTG GKAGPIYVVT DPSDLDLVNP KPGTLRHAVI QKGPLWIIFA RNMVIRLQQE 180 LLVTSDKTID GRGANVNIHN GAGITLQFVK NVIITNLHIK KIVPKQGGMI RDSVDHIGRR 240 TKSDGDGISI FGSSNVWIDH VSMENCADGL IDAIMGSTAI TISNSHFTHH NDVMLFGASN 300 SYTQDKIMQI TVAFNHFGQG LVQRMPRCRH GFFHVVNNDY THWLMYAIGG SMNPTIISQG 360 NRFIAPPNQG AKEVTKRDHT AEAEWKNWEW RSEGDLMMNG AVFVQSGSGK SKHPAKMDLM 420 PFKPGTYVAK LTKFSGALDC FVGKPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 1.0e-10 | 36 | 84 | 51 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 5.0e-25 | 180 | 363 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-59 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-72 | 172 | 367 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 35 | 446 | 30 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 35 | 446 | 59 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 34 | 446 | 29 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 35 | 446 | 18 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 446 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-21 | 118 | 365 | 15 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 181 | 363 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000002 | 125 | 363 | 16 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |