Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005761m |
Family | PL1 |
Protein Properties | Length: 446 Molecular Weight: 48710.7 Isoelectric Point: 7.2643 |
Chromosome | Chromosome/Scaffold: 1 Start: 4288216 End: 4293121 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 158 | 364 | 0 |
VIQNEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNALVRSSPSHFGWRTMADGDAVSIFGSSHIWV DHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTRDKAMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINS QGNRYAA |
Full Sequence |
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Protein Sequence Length: 446 Download |
MAVFESKRWV TGAFLAVLLV LCFVAAIAEI SGNRNGGTEE LQSSSNSSMA ARVAEDDESF 60 NKHAVDDPEE VVAMVDMSIR NSTERRKLGF FSCGTGNPID DCWRCDSNWQ KNRKRLADCG 120 IGFGRNAIGG RDGRFYVVTD PGDDDPVNPR PGTLRHAVIQ NEPLWIVFKR DMVIQLKQEL 180 IMNSFKTIDG RGVNVHIANG ACITIQFVTN IIIHGLHIHD CKPTGNALVR SSPSHFGWRT 240 MADGDAVSIF GSSHIWVDHN SLSNCADGLV DAVMGSTAIT ISNNHFTHHN EVMLLGHSDS 300 YTRDKAMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS AEPTINSQGN 360 RYAAPTNPFA KEVTKRVETP TTQWKSWNWR SEGDLLLNGA YFTPSGAGAS ASYARASSLG 420 AKSSAMVGAI TSGSGALPCR RGHPC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 1.0e-27 | 184 | 377 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 1.0e-70 | 177 | 362 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 5.0e-80 | 171 | 365 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 1 | 445 | 1 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 21 | 445 | 1 | 425 | pectate lyase [Prunus persica] |
EMBL | CBI33346.1 | 0 | 27 | 445 | 20 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 27 | 445 | 22 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 445 | 1 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 97 | 406 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 97 | 406 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-18 | 166 | 353 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 175 | 363 | 119 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000005 | 175 | 362 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |