| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa005818m |
| Family | GH28 |
| Protein Properties | Length: 443 Molecular Weight: 48318.9 Isoelectric Point: 7.5174 |
| Chromosome | Chromosome/Scaffold: 5 Start: 11904528 End: 11908878 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 416 | 0 |
| RGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIKATQDTRNWPLIAPLPSYGRGRELPGGRYSSFIHGDGIHDVVITGENGTIDGQGGVWWNMWRQRTL QFTRPNLIEFMNSKNIIISNVIFQNSPFWNIHPVYCSNVVVRYVTILAPYDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGI TIRRVRGSSPFAGIAIGSETSGGVENVLAEHINLYNMGVGIHIKTNIGRGGFIRNITVSDVYMEEVRRGIKIAGDVGDHPDDKYNQNALPVVKGITLKDI WGVQVQQAGVILGLKNSPFTGICLSNINLHGMTGSRSPPWKCSDISG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 443 Download |
| MGYLWFSLSI FLCLSYFSVA EVVTCSGIVP MRYRNDKISI TDFGGVGDGV TLNTKAFREA 60 IYRIEHLKRR GGTLLYIPPG VYLTESFNLT SHMTLYLAKG AVIKATQDTR NWPLIAPLPS 120 YGRGRELPGG RYSSFIHGDG IHDVVITGEN GTIDGQGGVW WNMWRQRTLQ FTRPNLIEFM 180 NSKNIIISNV IFQNSPFWNI HPVYCSNVVV RYVTILAPYD SPNTDGVDPD SSSNVCIEDS 240 YISTGDDLVA VKSGWDEYGI AYGRPSSGIT IRRVRGSSPF AGIAIGSETS GGVENVLAEH 300 INLYNMGVGI HIKTNIGRGG FIRNITVSDV YMEEVRRGIK IAGDVGDHPD DKYNQNALPV 360 VKGITLKDIW GVQVQQAGVI LGLKNSPFTG ICLSNINLHG MTGSRSPPWK CSDISGAAHL 420 VSPLQCSELS GAQQASTCSN YS* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 3.0e-25 | 38 | 414 | 397 | + polygalacturonase/glycoside hydrolase family protein |
| PLN03003 | PLN03003 | 3.0e-30 | 35 | 437 | 419 | + Probable polygalacturonase At3g15720 |
| PLN02218 | PLN02218 | 8.0e-32 | 38 | 404 | 377 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 9.0e-37 | 135 | 414 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| COG5434 | PGU1 | 2.0e-57 | 19 | 400 | 417 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 4 | 440 | 1 | 442 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 6 | 441 | 4 | 446 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 4 | 440 | 1 | 442 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 31 | 441 | 1 | 411 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 12 | 441 | 15 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.99931e-42 | 37 | 400 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.99931e-42 | 37 | 400 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.99931e-42 | 37 | 400 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.99931e-42 | 37 | 400 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-20 | 81 | 369 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
