y
Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa005859m |
Family | PL1 |
Protein Properties | Length: 441 Molecular Weight: 49247 Isoelectric Point: 8.7016 |
Chromosome | Chromosome/Scaffold: 5 Start: 15447324 End: 15449047 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 155 | 360 | 0 |
IQNGPLWIIFARDMRIKLTEELLVASDKTIDARGANVHILDGAQISLQFVKNVIITNLHIHNNKPGNGGMIRDSINHFGQRTRSDGDGISMFGATNVWID HVSLSNCADGLIDAIQGSTAITISNCHLTNHNDVMLFGSSDSNSQDQVMQITLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQ GNRFIA |
Full Sequence |
---|
Protein Sequence Length: 441 Download |
MAMEAEKLNV VILCVFVIAI TIPTTVRANI ADFDEHWQQR AAEAKKAAHE AYHDDPIAVT 60 EHFNKQVLDT FDYANNTRRN LNQKYKGPCM ATNPIDRCWR CDPNWEKNRK RLADCALGFG 120 RKATGGKLGP IYVVTDNTDA DLVNPKPGTL RHAVIQNGPL WIIFARDMRI KLTEELLVAS 180 DKTIDARGAN VHILDGAQIS LQFVKNVIIT NLHIHNNKPG NGGMIRDSIN HFGQRTRSDG 240 DGISMFGATN VWIDHVSLSN CADGLIDAIQ GSTAITISNC HLTNHNDVML FGSSDSNSQD 300 QVMQITLAFN HFGKGLVQRM PRCRWGFFHV VNNDYTHWLM YAIGGSQHPT IISQGNRFIA 360 PSNQATKEVT HRNNAQEGEW RSWNWRSEND LMMNGAFFVQ SGSPIRNLPK ADMIQAKPGS 420 FVTRLTRFAG PLKCVKNKPC * 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.008 | 199 | 297 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
pfam04431 | Pec_lyase_N | 2.0e-12 | 29 | 81 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-30 | 124 | 358 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-65 | 173 | 358 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-75 | 175 | 362 | 197 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 21 | 440 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 1 | 440 | 28 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 15 | 440 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 9 | 440 | 6 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 3 | 440 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 93 | 430 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 93 | 430 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-19 | 150 | 349 | 38 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000008 | 178 | 370 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.00000000000002 | 178 | 370 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |