| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa005960m |
| Family | GH28 |
| Protein Properties | Length: 436 Molecular Weight: 47636.9 Isoelectric Point: 5.9772 |
| Chromosome | Chromosome/Scaffold: 7 Start: 10401155 End: 10403955 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 85 | 403 | 0 |
| TFPPGRTYLTATIRLKSGVILDIQEGATLLGGPRLEDYPKEQNKWYVVLAENASNVGISGGGVVDGQGLKFVTRFDERKNVMVSWNWTGACLGDECRPRL VGFINCRNVNLSKLSLRQPAYWCLHIVQCENVLIQDVSIYGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTNTGPLYNLTVTNSWIRTKSSAIK LGSASWFDFKGLVFDNITIVDSHRGLGFQIRDGGNVSDITFSNINISTRYYDPSWWGRAEPIYVTTCPRNSNSKEGSISNLLFVNITSTSENGVFLSGSK GGLLSDLRFINLNLTYRRW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 436 Download |
| MAAPSPPPPS LIQSITVPLL FFLFLLPPLQ SNPATSPIIE LPHTLSATTI SVVDFGATGD 60 GVHYDTSAIQ SAIDSCPALS PCHVTFPPGR TYLTATIRLK SGVILDIQEG ATLLGGPRLE 120 DYPKEQNKWY VVLAENASNV GISGGGVVDG QGLKFVTRFD ERKNVMVSWN WTGACLGDEC 180 RPRLVGFINC RNVNLSKLSL RQPAYWCLHI VQCENVLIQD VSIYGDFNTP NNDGIDIEDS 240 NNTVITRCHI DTGDDAICPK TNTGPLYNLT VTNSWIRTKS SAIKLGSASW FDFKGLVFDN 300 ITIVDSHRGL GFQIRDGGNV SDITFSNINI STRYYDPSWW GRAEPIYVTT CPRNSNSKEG 360 SISNLLFVNI TSTSENGVFL SGSKGGLLSD LRFINLNLTY RRWTNYAGGL VDYRPGCQGL 420 PVKEGERERL GRSTE* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-10 | 46 | 263 | 225 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 4.0e-11 | 37 | 374 | 375 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-12 | 171 | 400 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-15 | 46 | 374 | 352 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 4.0e-45 | 42 | 328 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 29 | 420 | 15 | 411 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 29 | 420 | 15 | 411 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 17 | 420 | 8 | 409 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 17 | 420 | 8 | 404 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 39 | 420 | 3 | 385 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 8e-20 | 50 | 327 | 157 | 484 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
| PDB | 2uvf_A | 8e-20 | 50 | 327 | 157 | 484 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
| PDB | 2uve_B | 8e-20 | 50 | 327 | 157 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 8e-20 | 50 | 327 | 157 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 4e-18 | 50 | 325 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
