Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa006229m |
Family | PL1 |
Protein Properties | Length: 422 Molecular Weight: 46646.6 Isoelectric Point: 7.4679 |
Chromosome | Chromosome/Scaffold: 8 Start: 18602681 End: 18607106 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 136 | 342 | 0 |
VIQDQPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITVQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGSSHIWI DHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINS QGNRYLA |
Full Sequence |
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Protein Sequence Length: 422 Download |
MAVALSLFSL LSTMVLLQAL FVSAENEKLV NSRSDEALNE HAVDNPDEIA SMVDMSIRNS 60 TERRNLGFFS CATGNPVDDC WRCDPHWQLH RKRLANCGIG FGRNAVGGRD GKYYVVNNPR 120 DDDPINPRPG TLRHAVIQDQ PLWIVFKRDM VITLKQELIM NSFKTIDGRG VNVHIAYGAC 180 ITVQFITNVI IHGLHIHDCK PTGNAMVRSS PSHYGWRTIA DGDGISIFGS SHIWIDHNSL 240 SNCADGLIDA IMGSTAITIS NNYFTHHNEV MLLGHSDSYT RDKLMQVTIA YNHFGEGLIQ 300 RMPRCRHGYF HVVNNDYTHW EMYAIGGSAE PTINSQGNRY LAPNNAFAKE VTHRVETNNW 360 KHWNWRSEGD LLLNGAYFIA SGAGAAGSYA RASSLGAKSS SMVGTITAGA GVLNCRRGYQ 420 C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 162 | 338 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-69 | 155 | 340 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-80 | 149 | 344 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN75298.1 | 0 | 17 | 421 | 39 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 17 | 421 | 39 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301766.1 | 0 | 32 | 421 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321242.1 | 0 | 33 | 421 | 1 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 1 | 421 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 75 | 413 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 75 | 413 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 144 | 342 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000007 | 223 | 317 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000003 | 165 | 317 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |