y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa006392m |
Family | PL1 |
Protein Properties | Length: 414 Molecular Weight: 45245.9 Isoelectric Point: 7.0922 |
Chromosome | Chromosome/Scaffold: 5 Start: 14193450 End: 14195729 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 332 | 0 |
VIQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITVQFVTNIIIHGLHIHDCKPGGNAMVRSSPEHYGWRTISDGDGVSIFGGSHVWV DHCSLSNCKDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRFAA |
Full Sequence |
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Protein Sequence Length: 414 Download |
MARPSLGPSP LSLLSFLLFC LLTPTLIASR PLQQNPELVV QDVQRSINDS VSRRNLGYLS 60 CGTGNPIDDC WRCDPNWEQN RQRLADCAIG FGKNAIGGRD GKIYVVTDSG DNDPVNPKPG 120 TLRHAVIQDE PLWIIFQRDM TIQLKEELIM NSFKTIDGRG ASVHIAGGPC ITVQFVTNII 180 IHGLHIHDCK PGGNAMVRSS PEHYGWRTIS DGDGVSIFGG SHVWVDHCSL SNCKDGLVDA 240 IHGSTAITIS NNYMTHHDKV MLLGHSDSYT EDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF 300 HVVNNDYTHW EMYAIGGSAN PTINSQGNRF AAPDIRFSKE VTKHEDAPES EWRNWNWRSE 360 GDLMINGAFF TASGAGASSS YARASSLGAK PSSLVGSITT ASGALSCRKG SRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-26 | 152 | 330 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-74 | 145 | 330 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-82 | 139 | 334 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 25 | 413 | 29 | 418 | pectate lyase [Malus x domestica] |
GenBank | ABV32549.1 | 0 | 1 | 413 | 1 | 413 | pectase lyase [Prunus persica] |
DDBJ | BAE48664.1 | 0 | 1 | 413 | 1 | 413 | Pectate lyase [Prunus mume] |
DDBJ | BAF43572.1 | 0 | 1 | 413 | 1 | 413 | pectate lyase [Prunus persica] |
RefSeq | XP_002322215.1 | 0 | 23 | 413 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 65 | 374 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 65 | 374 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 134 | 330 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 5e-16 | 137 | 406 | 135 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 3krg_A | 0.000000000000001 | 137 | 406 | 114 | 387 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |