Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa006569m |
Family | PL1 |
Protein Properties | Length: 406 Molecular Weight: 44553 Isoelectric Point: 7.2965 |
Chromosome | Chromosome/Scaffold: 3 Start: 21003728 End: 21005357 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 119 | 324 | 0 |
IQDEPLWIIFKRDMVVQLKQELVMNSFKTIDGRGASVHIAGGPCITIHYATNIIIHGINIHDCKQAGNGNIRDSPQHSGWWTISDGDGVSIFGGKHIWVD HCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKGMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 406 Download |
MAGLSLLLIF LIITCFLTAT FASSSQLHDP ELVAQEVHRS INASRRNLGY LSCGTGNPID 60 DCWRCDPNWE QNRQRLADCA IGFGKDAIGG RNGRIYVVTD SGDDDPVNPR PGTLRHAVIQ 120 DEPLWIIFKR DMVVQLKQEL VMNSFKTIDG RGASVHIAGG PCITIHYATN IIIHGINIHD 180 CKQAGNGNIR DSPQHSGWWT ISDGDGVSIF GGKHIWVDHC SLSNCHDGLI DAIHGSTAIT 240 ISNNYMTHHD KVMLLGHSDS YTQDKGMQVT VAFNHFGEGL VQRMPRCRHG YFHVVNNDYT 300 HWEMYAIGGS AAPTINSQGN RFLAPNTRFN KEVTKHEDAP ESEWRGWNWR SEGDLMLNGA 360 YFRQSGAGAS SSYARASSLS ARPSSLVGSI TTTAGALICR KGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-28 | 144 | 322 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-76 | 137 | 322 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-79 | 131 | 326 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 21 | 405 | 14 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
GenBank | ADB90475.1 | 0 | 28 | 405 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
RefSeq | XP_002268976.1 | 0 | 21 | 405 | 19 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 1 | 405 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 2 | 405 | 3 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 57 | 397 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 57 | 397 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-19 | 126 | 323 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 3e-17 | 211 | 396 | 151 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 3e-17 | 211 | 396 | 151 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |