Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa006665m |
Family | PL1 |
Protein Properties | Length: 402 Molecular Weight: 43936.7 Isoelectric Point: 8.3578 |
Chromosome | Chromosome/Scaffold: 1 Start: 24429615 End: 24431551 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 122 | 320 | 0 |
IVFKGDMVIKLKEELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNC RDGLIDAIHGSTSITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGNFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 402 Download |
MAMPLSLLLL SLLLIPAFIS SSPVQDPELV IQEVQKSINA SRRNLGYLSC GTGNPMDDCW 60 RCDPNWEKNR QRLADCAIGF GKHAIGGRDG KIYVVTDAGD HPVNPKPGTL RYGVIQDQPL 120 WIVFKGDMVI KLKEELMMNS FKTIDGRGAS VHIAGGPCIT IQYVTNIIIH GLNIHDCKQG 180 GNAYVRDSPS HYGWRTLSDG DGVSIFGGSH VWVDHCSLSN CRDGLIDAIH GSTSITISNN 240 YMTHHNKVML LGHSDSYTQD KNMQVTIAFN HFGEGLVQRM PRCRHGNFHV VNNDYTHWEM 300 YAIGGSASPT INSQGNRFLA PNDRFNKEIT KHEDAPQKEW SKWNWRSSGD LLLNGAFFTA 360 SGAGASSSYA RASSLGARPS SLVSSLTAGA GSLKCRKGSR C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-27 | 122 | 318 | 213 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-70 | 133 | 318 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-80 | 127 | 322 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94358.1 | 0 | 1 | 401 | 1 | 402 | unknown [Populus trichocarpa] |
DDBJ | BAB59066.1 | 0 | 20 | 401 | 27 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002285340.1 | 0 | 20 | 401 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311747.1 | 0 | 1 | 401 | 1 | 402 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 16 | 401 | 17 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 54 | 391 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 54 | 391 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-19 | 122 | 319 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000002 | 182 | 395 | 120 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000002 | 182 | 395 | 120 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |