y
Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa006839m |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41331.7 Isoelectric Point: 6.7142 |
Chromosome | Chromosome/Scaffold: 4 Start: 22649519 End: 22652617 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 52 | 381 | 0 |
AKACASMNPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTALWACKASHGESCPSGATTLG FSDSNNIVVSGLASLNSQMFHIVINDCQNVQMQGVRVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGK EQEEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSP KHPCSEIKLEDVKLTYKNQAAESSCSHADG |
Full Sequence |
---|
Protein Sequence Length: 394 Download |
MANRRSLFSL SLIFVFMINS AIATPVTYNV ASLGAKADGK TDSTKAFLFA WAKACASMNP 60 GVIYVPAGTF FLRDVVFSGP CKNNAITFRI AGTLVAPSDY RVIGNAANWI FFHHVNGVTI 120 SGGILDGQGT ALWACKASHG ESCPSGATTL GFSDSNNIVV SGLASLNSQM FHIVINDCQN 180 VQMQGVRVSA SGNSPNTDGI HVQMSSGVTI LNSKIATGDD CVSIGPGTSN LWIEGVACGP 240 GHGISIGSLG KEQEEAGVQN VTVKTVTFTG TQNGLRIKSW GRPSTGFARN ILFQHATMVN 300 VENPIVIDQH YCPDNKGCPG QVSGVQISDV TYEDIHGTSA TEVAVKFDCS PKHPCSEIKL 360 EDVKLTYKNQ AAESSCSHAD GTTEGVVQPT SCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-94 | 55 | 392 | 342 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-99 | 18 | 389 | 381 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-102 | 30 | 393 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-110 | 1 | 392 | 410 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-145 | 5 | 393 | 392 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 393 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 1 | 393 | 1 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABC72325.1 | 0 | 1 | 393 | 1 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 1 | 393 | 1 | 393 | endopolygalacturonase [Prunus persica] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-23 | 61 | 366 | 55 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 1e-17 | 14 | 366 | 4 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 1e-17 | 14 | 366 | 4 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 3e-17 | 27 | 373 | 20 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.000000000000003 | 121 | 366 | 80 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |