| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa007270m |
| Family | PL1 |
| Protein Properties | Length: 376 Molecular Weight: 41474.8 Isoelectric Point: 8.7575 |
| Chromosome | Chromosome/Scaffold: 6 Start: 22493168 End: 22495922 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 105 | 284 | 0 |
| IVFEISGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISR CHFSQHDKTMLIGSDPSHIDDRCIRVTIHHCFFDATRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSECNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 376 Download |
| MGNSHGHRKR RNGPVSSKTD NSGFKYGPSD QSAQIPSSSA KKTSMVALPY AHVDASLRAL 60 AAQAEGFGRL AIGGLRGALY HVTTLADDGP GSLRDGSRKK EPLWIVFEIS GTIHLSSYLN 120 VSSYKTIDGR GQRIKLTGKG LRLKECEHVI VCNLEFEGGR GPDVDGIQIK PNSKHIWIDR 180 CSLRDYDDGL IDITRGSTDI TISRCHFSQH DKTMLIGSDP SHIDDRCIRV TIHHCFFDAT 240 RQRHPRVRFA KVHLYNNYTR NWGIYAVCAS VESQIFSECN IYEAGQKKVA FKYLTEKAAD 300 KEVAMTGHIK SEGDLFITGT QAGLTPTGVE HSMFHPSQHY QTFTVGPPTD DLKHVLQHCT 360 GWQSVPRPAD QTGVA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 1.0e-38 | 100 | 280 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-47 | 102 | 355 | 273 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-66 | 119 | 285 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 375 | 1 | 385 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 370 | 1 | 383 | unknown [Populus trichocarpa] |
| EMBL | CBI32661.1 | 0 | 45 | 375 | 1 | 329 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277576.1 | 0 | 1 | 375 | 1 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323433.1 | 0 | 47 | 371 | 4 | 328 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2e-40 | 54 | 319 | 15 | 306 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2e-40 | 54 | 319 | 15 | 306 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-24 | 72 | 282 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 1e-23 | 121 | 282 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 4e-23 | 126 | 341 | 82 | 305 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY289690 | 321 | 24 | 343 | 0 |
| DY271752 | 292 | 24 | 315 | 0 |
| DY275282 | 327 | 45 | 370 | 0 |
| JG177860 | 289 | 80 | 368 | 0 |
| DY271752 | 29 | 315 | 343 | 5.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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