Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa007271m |
Family | GH28 |
Protein Properties | Length: 376 Molecular Weight: 38922 Isoelectric Point: 8.2437 |
Chromosome | Chromosome/Scaffold: 7 Start: 22525435 End: 22527399 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 33 | 362 | 0 |
AWSKACASVQPAVIYVPAGRFLVQNAAFSGPCKNNAITFRIDGTLVAPSDYRVIGNAGNWILFEHVNGVTISGGLLDGQGTGLWACKASTKSCPRGATTL GFSSSNNIVVNGLASLNSQMFHIVINGCQNVKMQGVKVSASGNSPNTDGIHVQMSSEVTILNSKIATGDDCVSIGPGTTNLWIENVACGPGHGISIGSLG KDSQEDGVQNVTVKTVTFTGTQNGVRIKSWGRPSTGFARNILFQHIVNVNVQNPIVIDQNYCPGNKGCPGQVSGVKISDVIYQDIHGTSATQVAVKFDCS SKYPCSGIKLEDVKLTYKNQAAEASCKYAG |
Full Sequence |
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Protein Sequence Length: 376 Download |
MGGANAADLT YSVTSLGAIA DGKTDSTKVF LSAWSKACAS VQPAVIYVPA GRFLVQNAAF 60 SGPCKNNAIT FRIDGTLVAP SDYRVIGNAG NWILFEHVNG VTISGGLLDG QGTGLWACKA 120 STKSCPRGAT TLGFSSSNNI VVNGLASLNS QMFHIVINGC QNVKMQGVKV SASGNSPNTD 180 GIHVQMSSEV TILNSKIATG DDCVSIGPGT TNLWIENVAC GPGHGISIGS LGKDSQEDGV 240 QNVTVKTVTF TGTQNGVRIK SWGRPSTGFA RNILFQHIVN VNVQNPIVID QNYCPGNKGC 300 PGQVSGVKIS DVIYQDIHGT SATQVAVKFD CSSKYPCSGI KLEDVKLTYK NQAAEASCKY 360 AGGTAAGTVQ PTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-81 | 38 | 361 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-83 | 10 | 371 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-84 | 13 | 375 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-97 | 6 | 374 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-129 | 4 | 375 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 4 | 375 | 21 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABV32553.1 | 0 | 4 | 375 | 21 | 393 | endopolygalacturonase [Prunus persica] |
DDBJ | BAC22689.1 | 0 | 5 | 375 | 28 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 5 | 375 | 28 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 5 | 375 | 28 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 106 | 348 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 2e-17 | 31 | 360 | 11 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 4e-16 | 10 | 364 | 20 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 0.000000000000007 | 96 | 358 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000000000000007 | 96 | 358 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 299 | 77 | 375 | 0 |
JZ194028 | 288 | 71 | 358 | 0 |
JZ192826 | 286 | 75 | 360 | 0 |
JZ193571 | 287 | 9 | 295 | 0 |
JZ192324 | 275 | 78 | 352 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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