| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa012438m |
| Family | GH28 |
| Protein Properties | Length: 170 Molecular Weight: 18276.9 Isoelectric Point: 7.2453 |
| Chromosome | Chromosome/Scaffold: 4 Start: 9565596 End: 9566232 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 2 | 153 | 8.1e-30 |
| TCSQGNGLGVSVLGNTGKEEPIKGVTVRNCTFSHTEGAIRIQSSAASNANIAISNLIFEDIIFDYLQNMAIILDQEHCPSKQCRTTNPSKVKVENVSFKN IKGTSVDPRIVILECGTAPDACKDIRFIDLRVLVEGDDRLETQFRCKNVKPA | |||
| Full Sequence |
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| Protein Sequence Length: 170 Download |
| MTCSQGNGLG VSVLGNTGKE EPIKGVTVRN CTFSHTEGAI RIQSSAASNA NIAISNLIFE 60 DIIFDYLQNM AIILDQEHCP SKQCRTTNPS KVKVENVSFK NIKGTSVDPR IVILECGTAP 120 DACKDIRFID LRVLVEGDDR LETQFRCKNV KPAVAGHVDP AACNTRAVA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-9 | 1 | 116 | 116 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 5.0e-10 | 1 | 151 | 151 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 9.0e-11 | 1 | 166 | 166 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-16 | 1 | 151 | 153 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-21 | 1 | 163 | 165 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 4e-30 | 1 | 163 | 235 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 1e-30 | 1 | 163 | 235 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 4e-31 | 1 | 163 | 235 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 2e-29 | 1 | 163 | 235 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002282563.1 | 2e-29 | 1 | 163 | 236 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.0000005 | 2 | 133 | 218 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.0000005 | 2 | 133 | 218 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.001 | 2 | 155 | 192 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.001 | 2 | 155 | 192 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.001 | 2 | 155 | 192 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BQ641047 | 170 | 1 | 170 | 0 |
| GH292233 | 169 | 1 | 169 | 2e-24 |
| BJ568882 | 166 | 1 | 166 | 2e-24 |
| EH705183 | 163 | 1 | 163 | 1e-23 |
| DT741125 | 163 | 1 | 163 | 1e-23 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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